create Docker containers and remove envmodules

[kelly-sovacool]

Changes

• Set container URLs in config file
• Specify containers for all rules instead of envmodules
• Create containers as needed in docker/, with github actions to update them

Issues

• resolves Containerize major rules #42
• resolves convert to platform-agnostic pipeline #99
• resolves python 3.7 module is deprecated #101
• resolves add option for different tmp-dir #106
• resolves set singularity cachedir to workdir #108

Checklist

• update changelog

[kelly-sovacool]

• also need to copy resources from zeigelbauer dir to shared pipeliner dir /data/CCBR_Pipeliner/db/PipeDB/charlie/fastas_gtfs

[kelly-sovacool]

test runs completed succesfully on biowulf and FRCE. @kopardev this is ready for your review.

[kopardev]

deserves minor release increment.

[kelly-sovacool]

deserves minor release increment.

@kopardev
previously (#107 & #110) we had planned on the next version being v1.0.0 after this PR -- do you think it should be v0.11.0 instead? I think that's fine since we may want to reserve v1.0.0 for a more major change to the CLI in the future.