fix: set singularity bind paths #119
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kelly-sovacool
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Changes
singularity bind paths had an extra trailing quote due to the get_singularity_binds() function, which caused rules to fail while loading the singularity container.
additionally, including the full
/lscratch/$SLURM_JOB_IDcaused jobs to fail because$SLURM_JOB_IDresolved to the main job's ID, rather than the individual job ID.this adapts code from RENEE for resolving the bind paths for singularity.
Issues
also resolves #120
PR Checklist
(
Strikethroughany points that are not applicable.)[ ] Update docs if there are any API changes.CHANGELOG.mdwith a short description of any user-facing changes and reference the PR number. Guidelines: https://keepachangelog.com/en/1.1.0/