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fix: set singularity bind paths #119

Merged
merged 18 commits into from
Oct 17, 2024
Merged

fix: set singularity bind paths #119

merged 18 commits into from
Oct 17, 2024

Commits on Oct 9, 2024

  1. fix: remove extra quotes from sing binds

    @kelly-sovacool
    kelly-sovacool committed Oct 9, 2024
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Commits on Oct 10, 2024

  1. fix: simplify bind paths

    @kelly-sovacool
    kelly-sovacool committed Oct 10, 2024
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  2. refactor: set log/ to logs/ for jobby to match slurm logs

    @kelly-sovacool
    kelly-sovacool committed Oct 10, 2024
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  3. chore: update CHANGELOG.md

    @kelly-sovacool
    kelly-sovacool committed Oct 10, 2024
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Commits on Oct 14, 2024

  1. fix: do not resolve symlinks prematurely

    @kelly-sovacool
    kelly-sovacool committed Oct 14, 2024
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Commits on Oct 15, 2024

  1. refactor: try not running readlink

    @kelly-sovacool
    kelly-sovacool committed Oct 15, 2024
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  2. fix: localrules cannot use tmpdir as slurm job id

    @kelly-sovacool
    kelly-sovacool committed Oct 15, 2024
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  3. fix: typo in logs/ dirname

    @kelly-sovacool
    kelly-sovacool committed Oct 15, 2024
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Commits on Oct 16, 2024

  1. fix: use python -E to circumvent $PYTHONPATH 

    fixes #120
    @kelly-sovacool
    kelly-sovacool committed Oct 16, 2024
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  2. fix: make all scripts executable

    @kelly-sovacool
    kelly-sovacool committed Oct 16, 2024
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  3. fix: set PYTHONPATH in docker (#120)

    @kelly-sovacool
    kelly-sovacool committed Oct 16, 2024
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  4. chore: Merge branch 'fix-binds' of https://github.com/CCBR/CHARLIE in… 

    …to fix-binds
    @kelly-sovacool
    kelly-sovacool committed Oct 16, 2024
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  5. fix: updgrade container with PYTHONPATH set to conda lib

    @kelly-sovacool
    kelly-sovacool committed Oct 16, 2024
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  6. chore: delete deprecated code

    @kelly-sovacool
    kelly-sovacool committed Oct 16, 2024
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Commits on Oct 17, 2024

  1. fix: downgrade numpy to 1.21.0 for DCC docker 

    see https://stackoverflow.com/a/74934626
    @kelly-sovacool
    kelly-sovacool committed Oct 17, 2024
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  2. fix: set PYTHONPATH

    @kelly-sovacool
    kelly-sovacool committed Oct 17, 2024
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  3. fix: set PYTHONPATH in all dockerfiles

    @kelly-sovacool
    kelly-sovacool committed Oct 17, 2024
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  4. refactor: consolidate container definitions in one config file

    @kelly-sovacool
    kelly-sovacool committed Oct 17, 2024
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