Update the docs on the HCA CLI to indicate that it is retired

[theathorn]

Slack thread.

[theathorn]

Data Browser info on using the curl command.

[amarjandu]

PR: HumanCellAtlas/dcp-cli#526

[amarjandu]

Released a new version of the hca-cli: https://pypi.org/project/hca/#history Deprecation warnings occur when attempting to install.

pip install hca --no-cache
Collecting hca
  Downloading hca-8.0.0.tar.gz (86 kB)
     |████████████████████████████████| 86 kB 3.6 MB/s
    ERROR: Command errored out with exit status 1:
     command: /Users/amar/dev/hca/dcp-cli/.venv/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/4j/8cmps2r178bdkn_kpdtlvrpc0000gn/T/pip-install-kb4vl2ta/hca_7007a9dc4d494882b4c3aa12b7685659/setup.py'"'"'; __file__='"'"'/private/var/folders/4j/8cmps2r178bdkn_kpdtlvrpc0000gn/T/pip-install-kb4vl2ta/hca_7007a9dc4d494882b4c3aa12b7685659/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /private/var/folders/4j/8cmps2r178bdkn_kpdtlvrpc0000gn/T/pip-pip-egg-info-sp7hjduz
         cwd: /private/var/folders/4j/8cmps2r178bdkn_kpdtlvrpc0000gn/T/pip-install-kb4vl2ta/hca_7007a9dc4d494882b4c3aa12b7685659/
    Complete output (3 lines):

    This repository has been deprecated. For information about accessing Human Cell Atlas data please refer to the `Data Browser quick start guide. https://data.humancellatlas.org/guides/quick-start-guide`

    ----------------------------------------
WARNING: Discarding https://files.pythonhosted.org/packages/9c/20/f7320641cea5190d715eb562b130bcef041388ba4a79ab8f85027552dab5/hca-8.0.0.tar.gz#sha256=0504f081fc7dd4b74be8cbfa230576c9a37331548cc0d31a67e01bc086180678 (from https://pypi.org/simple/hca/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.

The same deprecation warnings have been placed within the github repository README: https://github.com/HumanCellAtlas/dcp-cli

[amarjandu]

@hannes-ucsc can you add demo-expectations for this issue?

[hannes-ucsc]

For demo, attempt installation of hca PyPI package.