Deprecate repository

[amarjandu]

Add deprecation within README.md
Remove uploading of .whl to pypi to force building from source
Does not allow installation via pip install hca see warning attached
Does allow installation via pip install hca==7.0.0

[amarjandu]

I performed the deprecation testing on https://pypi.org/project/dbio-cli/. version 1.0.0 is a known good build, version 1.5.5 is the version that fails when you try to install.

[dsotirho-ucsc]

Should databiosphere/azul#2897 be in the title? Seems like it should be a link in a comment instead.

Approved.

(.venv) daniel@Crispin ~/dcp-cli $ pip install git+https://github.com/HumanCellAtlas/dcp-cli.git@issues/amar/2897-RIP-cli
Collecting git+https://github.com/HumanCellAtlas/dcp-cli.git@issues/amar/2897-RIP-cli
  Cloning https://github.com/HumanCellAtlas/dcp-cli.git (to revision issues/amar/2897-RIP-cli) to /private/var/folders/8s/9dwlx2rj1n39n7mdk610dhj40000gn/T/pip-req-build-3qrgv4vs
  Running command git clone -q https://github.com/HumanCellAtlas/dcp-cli.git /private/var/folders/8s/9dwlx2rj1n39n7mdk610dhj40000gn/T/pip-req-build-3qrgv4vs
  Running command git checkout -b issues/amar/2897-RIP-cli --track origin/issues/amar/2897-RIP-cli
  Switched to a new branch 'issues/amar/2897-RIP-cli'
  Branch 'issues/amar/2897-RIP-cli' set up to track remote branch 'issues/amar/2897-RIP-cli' from 'origin'.
  Running command git submodule update --init --recursive -q
    ERROR: Command errored out with exit status 1:
     command: /Users/daniel/dcp-cli/.venv/bin/python -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/8s/9dwlx2rj1n39n7mdk610dhj40000gn/T/pip-req-build-3qrgv4vs/setup.py'"'"'; __file__='"'"'/private/var/folders/8s/9dwlx2rj1n39n7mdk610dhj40000gn/T/pip-req-build-3qrgv4vs/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base pip-egg-info
         cwd: /private/var/folders/8s/9dwlx2rj1n39n7mdk610dhj40000gn/T/pip-req-build-3qrgv4vs/
    Complete output (3 lines):

    The HCA module is deprecated, for assistance with accessing data please refer to the data-browser quick start guide at https://data.humancellatlas.org/guides/quick-start-guide

    ----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
WARNING: You are using pip version 19.2.3, however version 21.0.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.

[amarjandu]

@danielsotirhos having the issue link the in PR title is wrong (I did not change it from the default oops), I wanted the link to be only within the commit message.

I'm all for removing it from the commit message, but it does seem useful to have.

I'll leave it within the commit message for now, and @hannes-ucsc so he can 👀

[hannes-ucsc]

Suggested change

	This repository is deprecated, for assistance with accessing data please refer to the `data-browser quick start guide. <https://data.humancellatlas.org/guides/quick-start-guide>`_
	This repository has been deprecated. For information about accessing Human Cell Atlas data please refer to the `data-browser quick start guide. <https://data.humancellatlas.org/guides/quick-start-guide>`_

[hannes-ucsc]

Like above.

[hannes-ucsc]

After fixing the spelling, go ahead and merge.

[hannes-ucsc]

Suggested change

	This repository has been deprecated. For information about accessing Human Cell Atlas data please refer to the `data-browser quick start guide. <https://data.humancellatlas.org/guides/quick-start-guide>`_
	This repository has been deprecated. For information about accessing Human Cell Atlas data please refer to the `Data Browser quick start guide. <https://data.humancellatlas.org/guides/quick-start-guide>`_

[hannes-ucsc]

Ditto