Pixi Example #1
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Pixi Example #1
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px add -f rnaseq r-dplyr px add -f rnaseq r-dplyr px add -f rnaseq r-tidyr px add -f rnaseq r-ggplot2 px add -f rnaseq r-magrittr px add -f rnaseq r-devtools px add -f rnaseq bioconductor-Rsubread px add -f rnaseq bioconductor-Rsamtools px add -f rnaseq bioconductor-txdb.hsapiens.ucsc.hg38.knowngene px add -f rnaseq bioconductor-DESeq2 px add -f rnaseq bioconductor-edgeR pixi add bioconductor-soggi>=1.10.4 -f rnaseq
It wasn't specified
pixi add -f rnaseq r-reshape2 pixi add -f rnaseq r-ggrepel pixi add -f rnaseq r-ggrastr pixi add -f rnaseq pheatmap pixi add -f rnaseq r-pheatmap pixi add -f rnaseq r-stringr
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This won't run out of the box, you need the data, paths need to be fixed, etc.
But most of the dependancies should be there!