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Pixi Example #1

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Pixi Example #1

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Commits on Aug 19, 2024

  1. build: pixi init

    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  2. build: Switch to Multi Environment 

    https://pixi.sh/latest/features/multi_environment/#real-world-example-use-cases
    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  3. feat: Add first RNA-seq step

    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  4. feat: Add step 2 for rnaseq

    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  5. build: Add step 3

    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  6. build: Add step 4 

    px add -f rnaseq r-dplyr
px add -f rnaseq r-dplyr
px add -f rnaseq r-tidyr
px add -f rnaseq r-ggplot2
px add -f rnaseq r-magrittr
px add -f rnaseq r-devtools
px add -f rnaseq bioconductor-Rsubread
px add -f rnaseq bioconductor-Rsamtools
px add -f rnaseq bioconductor-txdb.hsapiens.ucsc.hg38.knowngene
px add -f rnaseq bioconductor-DESeq2
px add -f rnaseq bioconductor-edgeR
pixi add bioconductor-soggi>=1.10.4 -f rnaseq
    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  7. build: Add r-markdown 

    It wasn't specified
    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  8. build: Add step 5 

    pixi add -f rnaseq r-reshape2
pixi add -f rnaseq r-ggrepel
pixi add -f rnaseq r-ggrastr
pixi add -f rnaseq pheatmap
pixi add -f rnaseq r-pheatmap
pixi add -f rnaseq r-stringr
    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  9. docs: Clean up README

    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  10. docs: Add how to run

    @edmundmiller
    edmundmiller committed Aug 19, 2024
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  11. fix: Make all the script executable

    @edmundmiller
    edmundmiller committed Aug 19, 2024
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