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Loosen xlrd requirement #572

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Aug 15, 2021
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2 changes: 1 addition & 1 deletion .github/workflows/pytest-dependency.yml
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ jobs:
- name: Install specific out-dated version of dependencies
# Update the package requirements when changing minimum dependency versions
# Please also add a section "Dependency changes" to the release notes
run: pip install pandas==1.1.1 numpy==1.19.0 matplotlib==3.2.0 iam-units==2020.4.21
run: pip install pandas==1.1.1 numpy==1.19.0 matplotlib==3.2.0 iam-units==2020.4.21 xlrd==2.0

- name: Install other dependencies and package
run: pip install -e .[tests,deploy,optional-plotting,optional-io-formats,tutorials]
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10 changes: 10 additions & 0 deletions RELEASE_NOTES.md
Original file line number Diff line number Diff line change
@@ -1,3 +1,13 @@
# Next Release

## Dependency changes

The dependencies were updated to require `xlrd>=2.0` (previously `<2.0`) and `openpyxl` was added as a dependency.

## Individual updates

- [#572](https://github.com/IAMconsortium/pyam/pull/572) Unpinned the requirements for xlrd and added openpyxl as a requirement to ensure ongoing support of both `.xlsx` and `.xls` files out of the box

# Release v1.1.0

## Highlights
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2 changes: 1 addition & 1 deletion pyam/core.py
Original file line number Diff line number Diff line change
Expand Up @@ -194,7 +194,7 @@ def _init(self, data, meta=None, index=DEFAULT_META_INDEX, **kwargs):

# if initializing from xlsx, try to load `meta` table from file
if meta_sheet and isinstance(data, Path) and data.suffix == ".xlsx":
excel_file = pd.ExcelFile(data)
excel_file = pd.ExcelFile(data, engine="openpyxl")
if meta_sheet in excel_file.sheet_names:
self.load_meta(excel_file, sheet_name=meta_sheet, ignore_conflict=True)

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10 changes: 8 additions & 2 deletions pyam/utils.py
Original file line number Diff line number Diff line change
Expand Up @@ -138,7 +138,13 @@ def read_pandas(path, sheet_name="data*", *args, **kwargs):
if isinstance(path, Path) and path.suffix == ".csv":
return pd.read_csv(path, *args, **kwargs)
else:
xl = pd.ExcelFile(path)
if isinstance(path, pd.ExcelFile):
xl = path
else:
xl = pd.ExcelFile(
path, engine="xlrd" if path.suffix == ".xls" else "openpyxl"
)

sheet_names = pd.Series(xl.sheet_names)

# reading multiple sheets
Expand All @@ -153,7 +159,7 @@ def read_pandas(path, sheet_name="data*", *args, **kwargs):

# read single sheet (if only one exists in file) ignoring sheet name
else:
df = pd.read_excel(path, *args, **kwargs)
df = pd.read_excel(xl, *args, **kwargs)

# remove unnamed and empty columns, and rows were all values are nan
def is_empty(name, s):
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6 changes: 3 additions & 3 deletions setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,20 +13,21 @@

# NOTE TO DEVS
# If you change a minimum version below, please explicitly implement the change
# in our minimum-reqs test in the file ./.github/workflows/pytest-depedency.yml
# in our minimum-reqs test in the file ./.github/workflows/pytest-dependency.yml
# Please also add a section "Dependency changes" to the release notes
REQUIREMENTS = [
"argparse",
"iam-units>=2020.4.21",
"numpy>=1.19.0",
"requests",
"openpyxl",
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"pandas>=1.1.1",
"pint",
"PyYAML",
"matplotlib>=3.2.0",
"seaborn",
"six",
"xlrd<2.0",
"xlrd>=2.0",
]

EXTRA_REQUIREMENTS = {
Expand All @@ -44,7 +45,6 @@
"sphinxcontrib-bibtex<2.0",
"sphinxcontrib-programoutput",
"numpydoc",
"openpyxl",
"kaleido",
] # docs requires 'tutorials'
# GitHub Actions requires pandoc explicitly to build the docs
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2 changes: 1 addition & 1 deletion tests/test_io.py
Original file line number Diff line number Diff line change
Expand Up @@ -106,7 +106,7 @@ def test_init_df_with_na_unit(test_pd_df, tmpdir):

file = tmpdir / "na_unit.xlsx"
df.to_excel(file)
df_excel = pd.read_excel(file)
df_excel = pd.read_excel(file, engine="openpyxl")
assert np.isnan(df_excel.loc[1, "Unit"])
IamDataFrame(file) # reading from file as IamDataFrame works

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