…eprocessing utils (aramis-lab#1116)

* Move DWI specific functions from filemanip utils to dwi utils preproc pipeline utils

* Fix typing that works only for Python >= 3.10

* Clean api

Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.2.0 to 10.3.0.
- [Release notes](https://github.com/python-pillow/Pillow/releases)
- [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst)
- [Commits](python-pillow/Pillow@10.2.0...10.3.0)

---
updated-dependencies:
- dependency-name: pillow
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…is-lab#1121)

* add definition for FWHM

* add link for FWHM

* add definition for SUVR in glossary and link in ML_prepareSVM description

* Update docs/glossary.md

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Co-authored-by: Gensollen <[email protected]>

…ramis-lab#1127)

* Check that BIDS folders have a dataset_description.json file

* make the _check_bids_is_not_empty function a bit more robust

)

* Use of regex for subject conversion to RID and modification of associated unit tests

* test lint

* Use an enum for the study names

* update unit tests

* forgot one

)

Bumps [idna](https://github.com/kjd/idna) from 3.6 to 3.7.
- [Release notes](https://github.com/kjd/idna/releases)
- [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst)
- [Commits](kjd/idna@v3.6...v3.7)

---
updated-dependencies:
- dependency-name: idna
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* refactor freesurfer pipelines

* add forgotten cli

* use absolute imports in task definitions

* allow string or Path for get_subject_id

* fix folder creation in init_input_node

* run linter on maint branches

* run unit tests on maint branches

* run converter non regression tests on maint branches

* run instantiation tests on maint branches

…ids converter (aramis-lab#1144)

…1146)

* run linter on maint branches

* run unit tests on maint branches

* run converter non regression tests on maint branches

* run instantiation tests on maint branches

* update version number

* update changelog

… module (aramis-lab#1147)

…lab#1153)

* move bids version definition

* update unit tests

* update OASIS website URL

* Apply suggestions from code review

aramis-lab#1159)

* Wrong Processed sequence --> Results: Impossible to make bids of FDG PET Uniform (does not find it)

* Linter exception

* Linter word-list exception update

* Update clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fdg_pet.py

Co-authored-by: Gensollen <[email protected]>

* Update pyproject.toml

Co-authored-by: Gensollen <[email protected]>

* Update clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fdg_pet.py

Co-authored-by: Gensollen <[email protected]>

* Update clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fdg_pet.py

* try using a text file for ignoring words

* remove useless codespell:ignore

* sort ignore words

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Co-authored-by: Gensollen <[email protected]>