Merge pull request #281 from Mohinta2892/main

Adding project catena

.github/actions/validTagsList.json

@@ -2,7 +2,9 @@
   "development team": [
     "Ahrens Lab",
     "Branson Lab",
+    "Cardona Lab",
     "Dudman Lab",
+    "Funke Lab",
     "Pachitariu Lab",
     "Preibisch Lab",
     "Saalfeld Lab",
@@ -28,6 +30,7 @@
     "Typescript"
   ],
   "open source license": [
+    "APACHE",
     "BSD-3 Clause",
     "BSD-2 Clause",
     "CC-by-0",

src/content/projects/_project-template.md

@@ -41,7 +41,9 @@ development team:
   [
     "Ahrens Lab",
     "Branson Lab",
+    "Cardona Lab",
     "Dudman Lab",
+    "Funke Lab",
     "Pachitariu Lab",
     "Preibisch Lab",
     "Saalfeld Lab",
@@ -68,7 +70,15 @@ programming language:
     "Typescript",
   ]
 open source license:
-  ["BSD-3 Clause", "BSD-2 Clause", "CC-by-0", "GPL-2.0", "GPL-3.0", "MIT"]
+  [
+    "APACHE",
+    "BSD-3 Clause",
+    "BSD-2 Clause",
+    "CC-by-0",
+    "GPL-2.0",
+    "GPL-3.0",
+    "MIT",
+  ]
 software type:
   [
     "Command line application",

src/content/projects/catena.md

@@ -0,0 +1,27 @@
+---
+title: Catena
+tagline: "Pipeline for automated connectome reconstruction from volume Electron Microscopy."
+maintainer: Samia Mohinta
+project type: [OSSI - current]
+OSSI project status: [Active Development]
+OSSI proposal link: ../../proposals/catena.pdf
+github link: https://github.com/Mohinta2892/catena
+documentation link: https://github.com/Mohinta2892/catena
+installation instructions link: https://github.com/Mohinta2892/catena
+preferred contact method: mailto:[email protected]
+how to cite text: "Mohinta, S. (2022). Catena: Neuron Segmentation, Synapse Detection, Microtubule tracking and more... (Version 0.1) [Computer software]"
+development team: ["Cardona Lab", "Funke Lab", "Scientific Computing Software"]
+programming language: ["Python"]
+open source license: ["APACHE"]
+software type: ["Package"]
+use case:
+  [
+    "Electron microscopy (EM)",
+    "Segmentation",
+    "Tool packaging/distribution",
+    "Visualization",
+  ]
+usage environment: ["HPC cluster", "Local installation"]
+software ecosystem: ["CUDA", "Napari", "PyTorch", "Tensorflow"]
+supported file types: ["HDF5", "N5", "TIFF", "ZARR"]
+---

src/data/labNamesUrls.js

@@ -1,6 +1,12 @@
 export const allLabNamesAndUrls = [
+  ["Ahrens Lab", "https://www.janelia.org/lab/ahrens-lab"],
   ["Branson Lab", "https://www.janelia.org/lab/branson-lab"],
+  [
+    "Cardona Lab",
+    "https://www2.mrc-lmb.cam.ac.uk/group-leaders/a-to-g/albert-cardona/",
+  ],
   ["Dudman Lab", "https://www.janelia.org/lab/dudman-lab"],
+  ["Funke Lab", "https://www.janelia.org/lab/funke-lab"],
   ["Pachitariu Lab", "https://www.janelia.org/lab/pachitariu-lab"],
   ["Saalfeld Lab", "https://www.janelia.org/lab/saalfeld-lab"],
   ["Stringer Lab", "https://www.janelia.org/lab/stringer-lab"],