Update train.py, changing RF to XGBoost #70

	name: Run tests

	on:
	workflow_dispatch:
	push:
	branches: [ main ]
	paths:
	- 'src/**'
	- '.github/actions/test.yml'

	jobs:
	tests:
	name: ✅ Run tests
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10"]

	steps:
	- name: Git checkout
	uses: actions/checkout@v3
	with:
	# Disabling shallow clone is recommended for improving relevancy of reporting
	fetch-depth: 0

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	# - uses: actions/cache@v2
	# with:
	# path: ~/.cache/pip
	# key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
	# restore-keys: \|
	# ${{ runner.os }}-pip-

	- name: Install dependencies
	run: \|
	pip install .[test]

	- name: Prepare data and train the model
	run: \|
	./prepare.sh
	python src/predict_drug_target/train.py

	- name: Run tests
	run: \|
	pytest -s


	codeql:
	name: 🔎 CodeQL analysis
	runs-on: ubuntu-latest
	permissions:
	security-events: write # required for all workflows
	actions: read # only required for workflows in private repositories
	contents: read

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3

	- name: Initialize CodeQL
	uses: github/codeql-action/init@v2
	with:
	languages: python

	- name: Autobuild
	uses: github/codeql-action/autobuild@v2

	- name: Perform CodeQL Analysis
	uses: github/codeql-action/analyze@v2

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