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Re #2361: fix seg combobox filling #2369

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Apr 21, 2021
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Original file line number Diff line number Diff line change
Expand Up @@ -155,7 +155,9 @@ const SegmentationPanel = ({

const brushStackState = getBrushStackState();
brushStackState.activeLabelmapIndex = newLabelmapIndex;
setState(state => ({ ...state, selectedSegmentation }));
if (selectedSegmentation) {
setState(state => ({ ...state, selectedSegmentation }));
}

refreshViewports();

Expand Down Expand Up @@ -189,10 +191,9 @@ const SegmentationPanel = ({
'extensiondicomsegmentationsegloaded',
refreshSegmentations
);

document.addEventListener(
'extensiondicomsegmentationsegloadingfailed',
cleanSegmentationComboBox
'extensiondicomsegmentationsegselected',
updateSegmentationComboBox
);

/*
Expand All @@ -213,8 +214,8 @@ const SegmentationPanel = ({
refreshSegmentations
);
document.removeEventListener(
'extensiondicomsegmentationsegloadingfailed',
cleanSegmentationComboBox
'extensiondicomsegmentationsegselected',
updateSegmentationComboBox
);
cornerstoneTools.store.state.enabledElements.forEach(enabledElement =>
enabledElement.removeEventListener(
Expand All @@ -225,6 +226,15 @@ const SegmentationPanel = ({
};
}, [activeIndex, viewports]);

const updateSegmentationComboBox = (e) => {
const index = e.detail.activatedLabelmapIndex;
if (index !== -1) {
setState(state => ({ ...state, selectedSegmentation: index }));
} else {
cleanSegmentationComboBox();
}
}

const cleanSegmentationComboBox = () => {
setState(state => ({
...state,
Expand All @@ -233,6 +243,7 @@ const SegmentationPanel = ({
labelMapList: [],
segmentList: [],
isDisabled: true,
selectedSegmentation: -1,
}));
}

Expand Down Expand Up @@ -298,7 +309,7 @@ const SegmentationPanel = ({
);

const filteredReferencedSegDisplaysets = referencedSegDisplaysets.filter(
(segDisplay => segDisplay.loadError !== true && segDisplay.isLoaded));
(segDisplay => segDisplay.loadError !== true));

return filteredReferencedSegDisplaysets.map((displaySet, index) => {
const {
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ import Select from 'react-select';

const SegmentationSelect = ({ value, formatOptionLabel, options }) => (
<Select
value={value}
value={value === undefined ? null : value}
formatOptionLabel={formatOptionLabel}
styles={segmentationSelectStyles}
options={options}
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -55,6 +55,7 @@ export default function getSopClassHandlerModule({ servicesManager }) {
referencedDisplaySetUID: null, // Assigned when loaded.
labelmapIndex: null, // Assigned when loaded.
isLoaded: false,
loadError: false,
hasOverlapping: false,
SeriesDate,
SeriesTime,
Expand All @@ -68,7 +69,6 @@ export default function getSopClassHandlerModule({ servicesManager }) {
};

segDisplaySet.load = async function(referencedDisplaySet, studies) {
segDisplaySet.isLoading = true;
segDisplaySet.isLoaded = true;
const { StudyInstanceUID } = referencedDisplaySet;
const segArrayBuffer = await DicomLoaderService.findDicomDataPromise(
Expand Down Expand Up @@ -129,7 +129,6 @@ export default function getSopClassHandlerModule({ servicesManager }) {
}
};

segDisplaySet.isLoading = false;
return segDisplaySet;
},
};
Expand Down
88 changes: 7 additions & 81 deletions extensions/dicom-segmentation/src/getSourceDisplaySet.js
Original file line number Diff line number Diff line change
@@ -1,90 +1,16 @@
import setActiveLabelmap from './utils/setActiveLabelMap';
import { classes } from '@ohif/core';

const { ImageSet } = classes;
import { getReferencedDisplaySet } from '../../../platform/core/src/classes/metadata/StudyMetadata.js';

export default function getSourceDisplaySet(studies, segDisplaySet, activateLabelMap = true, onDisplaySetLoadFailureHandler) {
const referencedDisplaySet = _getReferencedDisplaySet(segDisplaySet, studies);
const referencedDisplaySet = getReferencedDisplaySet(segDisplaySet, studies);

let activatedLabelmapPromise;
if (activateLabelMap) {
setActiveLabelmap(referencedDisplaySet, studies, segDisplaySet, undefined, onDisplaySetLoadFailureHandler);
activatedLabelmapPromise = setActiveLabelmap(referencedDisplaySet, studies, segDisplaySet, undefined, onDisplaySetLoadFailureHandler);
}

return referencedDisplaySet;
}

const _getReferencedDisplaySet = (segDisplaySet, studies) => {
let allDisplaySets = [];

studies.forEach(study => {
allDisplaySets = allDisplaySets.concat(study.displaySets);
});

const otherDisplaySets = allDisplaySets.filter(
ds => ds.displaySetInstanceUID !== segDisplaySet.displaySetInstanceUID
);

const { metadata } = segDisplaySet;

let referencedSeriesInstanceUIDs;

if (metadata.ReferencedSeriesSequence) {
const ReferencedSeriesSequence = _toArray(
metadata.ReferencedSeriesSequence
);

referencedSeriesInstanceUIDs = ReferencedSeriesSequence.map(
ReferencedSeries => ReferencedSeries.SeriesInstanceUID
);
} else {
const { PerFrameFunctionalGroupsSequence } = metadata;

let SourceImageSequence;

if (metadata.SourceImageSequence) {
SourceImageSequence = metadata.SourceImageSequence;
} else {
const firstFunctionalGroups = _toArray(
PerFrameFunctionalGroupsSequence
)[0];
const { DerivationImageSequence } = firstFunctionalGroups;

SourceImageSequence = DerivationImageSequence;
}

const firstSourceImage = _toArray(SourceImageSequence)[0];

const { ReferencedSOPInstanceUID } = firstSourceImage;

referencedSeriesInstanceUIDs = _findReferencedSeriesInstanceUIDsFromSOPInstanceUID(
otherDisplaySets,
ReferencedSOPInstanceUID
);
}

const referencedDisplaySet = otherDisplaySets.find(ds =>
referencedSeriesInstanceUIDs.includes(ds.SeriesInstanceUID)
);

return referencedDisplaySet;
};

const _findReferencedSeriesInstanceUIDsFromSOPInstanceUID = (
displaySets,
SOPInstanceUID
) => {
const imageSets = displaySets.filter(ds => ds instanceof ImageSet);

for (let i = 0; i < imageSets.length; i++) {
const { images } = imageSets[i];
for (let j = 0; j < images.length; j++) {
if (images[j].SOPInstanceUID === SOPInstanceUID) {
return [images[j].getData().metadata.SeriesInstanceUID];
}
}
return {
referencedDisplaySet : referencedDisplaySet,
activatedLabelmapPromise : activatedLabelmapPromise
}
};

function _toArray(arrayOrObject) {
return Array.isArray(arrayOrObject) ? arrayOrObject : [arrayOrObject];
}
15 changes: 5 additions & 10 deletions extensions/dicom-segmentation/src/utils/setActiveLabelMap.js
Original file line number Diff line number Diff line change
Expand Up @@ -47,23 +47,15 @@ export default async function setActiveLabelmap(
return labelmapIndex;
}

if (displaySet.isLoading) {
return activeLabelmapIndex;
}

if (!displaySet.isLoaded) {
try {
await displaySet.load(referencedDisplaySet, studies);
} catch (error) {
displaySet.isLoaded = false;
displaySet.isLoading = false;
displaySet.loadError = true;
onDisplaySetLoadFailure(error);

const event = new CustomEvent('extensiondicomsegmentationsegloadingfailed');
document.dispatchEvent(event);

return activeLabelmapIndex;
return -1;
}
}

Expand All @@ -74,8 +66,11 @@ export default async function setActiveLabelmap(

// This might have just been created, so need to use the non-cached value.
state = cornerstoneTools.getModule('segmentation').state;

brushStackState = state.series[firstImageId];
brushStackState.activeLabelmapIndex = labelmapIndex;
if (brushStackState) {
brushStackState.activeLabelmapIndex = labelmapIndex;
}

refreshViewports();
callback();
Expand Down
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