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NLPAR Chunk Patch ... again #62

Merged
merged 90 commits into from
Jun 7, 2024
Merged

NLPAR Chunk Patch ... again #62

merged 90 commits into from
Jun 7, 2024

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drowenhorst-nrl
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Fixed

  • This time I think that edge case for NLPAR chunking of scans is really fixed.
  • Wrote on a chalkboard 100 times, "I will run ALL the unit tests before release."

drowenhorst-nrl and others added 30 commits February 2, 2024 13:15
@drowenhorst-nrl
Post-release developer version numbering
dc3b606 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Merge branch 'main' into develop
73a9eea 
* main:
  Post-release developer version numbering (USNavalResearchLaboratory#53)
@drowenhorst-nrl
Update to work better with rectangular or odd shaped detectors.
c3edccf 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Fix type error
cb83221 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Fix type error
4aa6d2e 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Attempt to fix hung processes, should be more robust.
811c7bf 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Code cleanup
6ffa95a 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Make default to read ubyte/uint16 and convert to float32 on GPU.
a230d07 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Fix ray issue with making a copy of the pattern array.
de16f75 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Added dependabot to update actions.
6dcbedf 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Update tests.yml
8111b7c
@drowenhorst-nrl
Update tests.yml
39c4ca7
@drowenhorst-nrl
Merge commit '307e94beb748518d385aa1989e2a57554294da91' into develop
4800c19 
* commit '307e94beb748518d385aa1989e2a57554294da91':
  More efficient GPU bandwidth usage for ubyte and uint16 patterns.   (USNavalResearchLaboratory#54)
@drowenhorst-nrl
Moved transpose of images for GPU pipeline to GPU processing.
a653e97 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Fixed typo
62549c3 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Begin wrapping bandindexing in larger loops
00cacd8 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Fix Typo
f18bf5f 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Wrapping band indexing into larger loops
40eb17c 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Wrap bandindexing in to larger loops. Checkpoint.
822a8f8 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Wrapped band indexing in to bigger loops.
88a55aa 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Include requirement for numba >= 0.53
6f690bf 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Merge branch 'main' into develop
b500a96 
* main:
  Update publish.yml
@drowenhorst-nrl
Update tests for newer action versions.
4fd7ff0 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Update dependabot.yml
840b767
@drowenhorst-nrl
Update dependabot.yml
8fc8f6c
@drowenhorst-nrl
Hard code 3-element sort in numba functions for more speed.
99af42c 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Changed Numba cache location, should be more robust, survive system r…
d7a51cb 
…estarts.

Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Removed band_vote as it is now part of tripletvote
d86568e 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Update pairvote function ... it's fast but less accurate. There for c…
345d93b 
…ompleteness.

Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
First attempt at chunker
7e06911 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Correct method calling.
87ca0ab 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Speed up lambda opt for large scans by sampling.
1f35742 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Improved reporting on NLPAR_CL
4fbf081 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Refactor gpuid --> gpu_id to match rest of package.
3d15720 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Correct sigma reporting
ba4c02e 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Implement auto-check of ray/pyopencl for NLPAR.
cd8e3d7 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Update license.
932aea8 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Repair typos
4575d2c 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Perform full check of getting GPU at import.
e988a6f 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Correct gpu test exception.
c2bf8bb 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Try to fix again.
057efe2 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Check
f66bc24 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Need to look at this more later.
3c03d8c 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Merge branch 'main' into develop
d2cf69e 
* main:
  NLPAR GPU (USNavalResearchLaboratory#56)
@drowenhorst-nrl
Merge branch 'main' into develop
7da8c0d
@drowenhorst-nrl
Merge branch 'main' into develop
a24f7a6 
* main:
  0.3.1 (USNavalResearchLaboratory#59)
  Prep for 0.3.0 release. (USNavalResearchLaboratory#58)
@drowenhorst-nrl
Merge branch 'main' into develop
63155d3 
* main:
  Bug repair (USNavalResearchLaboratory#60)
@drowenhorst-nrl
Merge branch 'main' into develop
dfb2273 
* main:
  Prepare for 0.3.2 release.
@drowenhorst-nrl
Bug fix
fe7a803 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Fix IPF color so that the number of columns/rows are automatically
2444523 
detected for supported pattern file types.

Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Fix to nlpar chunker for edge case with larger overlaps.
3a73165 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
More conservative memory allocation.
323a802 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Reduce number of GPU queues.
dc01ab0 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Another memory adjustment
65de924 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Prepare for 0.3.3 release.
bfe1ae3 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Fix NLPAR chunking ... again
c02d593 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Prep for 0.3.4 release.
a9773ea 
Signed-off by: David Rowenhorst <[email protected]>
@drowenhorst-nrl
Merge branch 'main' into develop
fe1e191 
* main:
  Bug fixes for 0.3.3 (USNavalResearchLaboratory#61)
@drowenhorst-nrl drowenhorst-nrl merged commit 93ee812 into USNavalResearchLaboratory:main Jun 7, 2024
8 checks passed
@drowenhorst-nrl drowenhorst-nrl deleted the develop branch June 7, 2024 22:33
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