DOC: update README and doc

README.md

@@ -160,5 +160,6 @@ Also, please cite the following tools/databases used by Phables.
 * Li H. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics, 34:3094-3100 (2018). [https://doi.org/10.1093/bioinformatics/bty191](https://doi.org/10.1093/bioinformatics/bty191)
 * Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools, Bioinformatics, Volume 25, Issue 16, Pages 2078–2079 (2009). [https://doi.org/10.1093/bioinformatics/btp352](https://doi.org/10.1093/bioinformatics/btp352)
 * Woodcroft BJ, Newell R, CoverM: Read coverage calculator for metagenomics (2017). [https://github.com/wwood/CoverM](https://github.com/wwood/CoverM)
+* Roach, M. J., Hart, B. J., Beecroft, S. J., Papudeshi, B., Inglis, L. K., Grigson, S. R., Mallawaarachchi, V., Bouras, G., & Edwards, R. A. Koverage: Read-coverage analysis for massive (meta)genomics datasets. Journal of Open Source Software, 9(94), 6235, (2024). [https://doi.org/10.21105/joss.06235](https://doi.org/10.21105/joss.06235)
 * Hagberg AA, Schult DA, and Swart PJ. Exploring network structure, dynamics, and function using NetworkX. In Proceedings of the 7th Python in Science Conference (SciPy2008), Gäel Varoquaux, Travis Vaught, and Jarrod Millman (Eds), (Pasadena, CA USA), pp. 11–15 (2008).
 * Gurobi Optimization. [https://www.gurobi.com/](https://www.gurobi.com/).

docs/citation.md

@@ -32,5 +32,6 @@ Also, please cite the following tools/databases used by Phables.
 * Li H. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics, 34:3094-3100 (2018). [https://doi.org/10.1093/bioinformatics/bty191](https://doi.org/10.1093/bioinformatics/bty191)
 * Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools, Bioinformatics, Volume 25, Issue 16, Pages 2078–2079 (2009). [https://doi.org/10.1093/bioinformatics/btp352](https://doi.org/10.1093/bioinformatics/btp352)
 * Woodcroft BJ, Newell R, CoverM: Read coverage calculator for metagenomics (2017). [https://github.com/wwood/CoverM](https://github.com/wwood/CoverM)
+* Roach, M. J., Hart, B. J., Beecroft, S. J., Papudeshi, B., Inglis, L. K., Grigson, S. R., Mallawaarachchi, V., Bouras, G., & Edwards, R. A. Koverage: Read-coverage analysis for massive (meta)genomics datasets. Journal of Open Source Software, 9(94), 6235, (2024). [https://doi.org/10.21105/joss.06235](https://doi.org/10.21105/joss.06235)
 * Hagberg AA, Schult DA, and Swart PJ. Exploring network structure, dynamics, and function using NetworkX. In Proceedings of the 7th Python in Science Conference (SciPy2008), Gäel Varoquaux, Travis Vaught, and Jarrod Millman (Eds), (Pasadena, CA USA), pp. 11–15 (2008).
 * Gurobi Optimization. [https://www.gurobi.com/](https://www.gurobi.com/).