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Issues: ZSI-Bio/bdg-sequila

28 Open 22 Closed
28 Open 22 Closed
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Issues list

quality binning
#205 opened Aug 14, 2020 by agaszmurlo
Invitation to collaborate on ADAM, bgd-formats, Disq
#152 opened Oct 14, 2019 by heuermh
2
update documetation on web page
#149 opened Apr 26, 2019 by mwiewior
@mwiewior
Wrong coverage calculation when sample is split in many files not a single BAM
#128 opened Nov 1, 2018 by mwiewior
Remove algo selection from bdg_coverage
#121 opened Aug 29, 2018 by mwiewior 0.4.1
Optimize CTAS/IAS to get rid of intermediate records serialization enhancement
#114 opened Aug 14, 2018 by mwiewior 0.5.0
add predicate pushdow for readBAMFile method as well bug
#112 opened Aug 12, 2018 by mwiewior 0.4.1
@mwiewior
Intel GKL support for BAM writing enhancement
#111 opened Aug 11, 2018 by mwiewior
BAM Sparser enhancement
#109 opened Aug 9, 2018 by mwiewior
Link performance highlights to the benchmark/api sections in landing page documentation enhancement
#108 opened Aug 8, 2018 by mwiewior 0.4.1
Review code and check extract SAMHeaderReader.VALIDATION_STRINGENCY_PROPERTY as param enhancement
#106 opened Aug 7, 2018 by mwiewior 0.4.1
@mwiewior
1
Store sample stats as a table meta to speed up some queries enhancement
#104 opened Aug 6, 2018 by mwiewior
add fine grained upersisting
#101 opened Aug 2, 2018 by mwiewior 0.4.1
coverage for a fixed window length - eg 500bp
#99 opened Aug 1, 2018 by mwiewior 0.4.1
@mwiewior
Per base cov tester for 2 coverage dataframes
#98 opened Aug 1, 2018 by mwiewior 0.4.1
@agaszmurlo
1
BAM column mapping review and adding columns useful for filtering
#96 opened Aug 1, 2018 by mwiewior 0.4.1
Add support for spark-bam and hadoop-bam( sequila global param)
#94 opened Aug 1, 2018 by mwiewior 0.4.1
@mwiewior
confirm bdg_coverage results with mosdepth/samtools
#93 opened Aug 1, 2018 by mwiewior 0.4.1
PP for interval join with BAMDataSource question
#89 opened Jul 25, 2018 by mwiewior
Better error handling if start> end in data used for joining
#87 opened Jul 17, 2018 by mwiewior
Migrate hadoop-bam to spark-bam
#83 opened Jun 1, 2018 by mwiewior 0.5.0
@agaszmurlo
1
Remove version file from docker dir - it's no longer used enhancement
#64 opened Apr 11, 2018 by mwiewior 0.4.1
@mwiewior
Add a short description at docker hub + intro section in the documentation - what our project is all about
#56 opened Mar 28, 2018 by mwiewior
Unify column names BAM and ADAM datasource bug
#52 opened Mar 26, 2018 by mwiewior 0.4.1
2
BAMDataSource add more columns
#47 opened Mar 22, 2018 by mwiewior
@agaszmurlo
ProTip! Adding no:label will show everything without a label.