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[SCHEMA] MRS schema updates #1830

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merged 7 commits into from
Jun 1, 2024

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effigies
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@markmikkelsen Here is the PR I promised in #1377 (comment). A bit ahead of schedule.

@rwblair Heads up that we need to add this to the validator. We're going to need to make sure our NIfTI reader can handle NIfTI-2 and header extensions.

@effigies effigies added BEP schema Issues related to the YAML schema representation of the specification. Patch version release. spectroscopy labels May 21, 2024
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codecov bot commented May 21, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 88.04%. Comparing base (0b03476) to head (1d5e089).
Report is 120 commits behind head on bep022.

Additional details and impacted files
@@           Coverage Diff           @@
##           bep022    #1830   +/-   ##
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  Coverage   88.04%   88.04%           
=======================================
  Files          16       16           
  Lines        1380     1380           
=======================================
  Hits         1215     1215           
  Misses        165      165           

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@effigies effigies added this to the 1.10.0 milestone May 25, 2024
@effigies effigies changed the title [SCHEMA] Add check for consistency between MRS header and sidecar [SCHEMA] MRS schema updates May 31, 2024
This implements the following agreed upon suggestions:

* Set InversionTime to recommended if `inv` entity is present.
  (`entities.inversion`)
* Move to RepetitionTime and VolumeTiming, rather than RepetitionTime
  as an array in the variable-timing case.
* ReferenceSignal should be uniformly recommended.
@markmikkelsen markmikkelsen merged commit e1ae75e into bids-standard:bep022 Jun 1, 2024
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@effigies effigies deleted the schema/mrs_header branch June 1, 2024 02:57
@effigies effigies added the exclude-from-changelog This item will not feature in the automatically generated changelog label Aug 29, 2024
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