Merge pull request #1080 from bids-standard/dependabot/submodules/bid…

…s-examples-4460013

Build(deps): Bump bids-examples from `ad9db4b` to `4460013`

.gitignore

@@ -47,6 +47,7 @@ nosetests.xml
 coverage.xml
 *,cover
 .hypothesis/
+cov.xml
 
 # Translations
 *.mo

bids/layout/tests/test_layout_on_examples.py

@@ -46,7 +46,7 @@ def test_layout_on_examples_with_derivatives(dataset, nb_files, bids_examples):
         ("asl005", 10),
         ("ds001", 134), # with anat and func data
         ("eeg_cbm", 104),
-        ("ds000246", 54), # with meg data
+        ("ds000246", 19), # with meg data (excludes all files in .ds folders)
         ("genetics_ukbb", 96), # with dwi data
         ("ieeg_visual_multimodal", 148), # also with fmap data; ignore stimmuli folder
         ("pet001", 12),

bids/layout/tests/test_path_building.py

@@ -135,23 +135,7 @@ def test_path_building_in_raw_scope(dataset, bids_examples):
         assert path == bf.path
 
 @pytest.mark.parametrize("scope", ["raw"])
-@pytest.mark.parametrize(
-    "dataset",
-    [
-        pytest.param(
-            "ds000247",
-            marks=pytest.mark.xfail(strict=True,
-                reason="meg ds folder"
-            ),
-        ),
-        pytest.param(
-            "ds000246",
-            marks=pytest.mark.xfail(strict=True,
-                reason="meg ds folder"
-            ),
-        ),
-    ],
-)
+@pytest.mark.parametrize("dataset", ["ds000247", "ds000246"])
 def test_path_building_on_examples_with_derivatives_meg_ds_folder(dataset, scope, bids_examples):
     layout = BIDSLayout(bids_examples / dataset, derivatives=True)
     files = layout.get(subject=".*", datatype=".*", regex_search = True, scope=scope)

bids/layout/tests/test_validation.py

@@ -111,40 +111,6 @@ def test_is_session_level_true(testvalidator):
         assert result
 
 
-# checks is_session_level() function false cases
-def test_is_session_level_false(testvalidator):
-    target_list = [
-        "/sub-01/ses-ses/sub-01_dwi.bval",  # redundant dir /ses-ses/
-        "/sub-01/01_dwi.bvec",  # missed subject suffix
-        "/sub-01/sub_dwi.json",  # missed subject id
-        "/sub-01/sub-01_23_run-01_dwi.bval",  # wrong _23_
-        "/sub-01/sub-01_run-01_dwi.vec",  # wrong extension
-        "/sub-01/sub-01_run-01_dwi.jsn",  # wrong extension
-        "/sub-01/sub-01_acq_dwi.bval",  # missed suffix value
-        "/sub-01/sub-01_acq-23-singleband_dwi.bvec",  # redundant -23-
-        "/sub-01/anat/sub-01_acq-singleband_dwi.json",  # redundant /anat/
-        "/sub-01/sub-01_recrod-record_acq-singleband_run-01_dwi.bval", # redundant record-record_
-        "/sub_01/sub-01_acq-singleband_run-01_dwi.bvec",  # wrong /sub_01/
-        "/sub-01/sub-01_acq-singleband__run-01_dwi.json",  # wrong __
-        "/sub-01/ses-test/sub-01_ses_test_dwi.bval",  # wrong ses_test
-        "/sub-01/ses-test/sb-01_ses-test_dwi.bvec",  # wrong sb-01
-        "/sub-01/ses-test/sub-01_ses-test_dw.json",  # wrong modality
-        "/sub-01/ses-test/sub-01_ses-test_run-01_dwi.val",  # wrong extension
-        "/sub-01/ses-test/sub-01_run-01_dwi.bvec",  # missed session in the filename
-        "/sub-01/ses-test/ses-test_run-01_dwi.json",  # missed subject in the filename
-        "/sub-01/ses-test/sub-01_ses-test_acq-singleband.bval",  # missed modality
-        "/sub-01/ses-test/sub-01_ses-test_acq-singleband_dwi",  # missed extension
-        "/ses-test/sub-01/sub-01_ses-test_acq-singleband_dwi.json",  # wrong dirs order
-        "/sub-01/ses-test/sub-02_ses-test_acq-singleband_run-01_dwi.bval", # wrong sub id in the filename
-        "/sub-01/sub-01_ses-test_acq-singleband_run-01_dwi.bvec",  # ses dir missed
-        "/ses-test/sub-01_ses-test_acq-singleband_run-01_dwi.json"  # sub id dir missed
-    ]
-
-    for item in target_list:
-        result = testvalidator.is_session_level(item)
-        assert not result
-
-
 # checks is_subject_level() function true cases
 def test_is_subject_level_true(testvalidator):
     target_list = [