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Unify auto-acmg methods #110

Merged
merged 3 commits into from
May 27, 2024
Merged

Unify auto-acmg methods #110

merged 3 commits into from
May 27, 2024

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gromdimon
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@gromdimon gromdimon linked an issue May 27, 2024 that may be closed by this pull request
Unify AutoACMG methods #109
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codecov bot commented May 27, 2024 •
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Codecov Report

Attention: Patch coverage is 49.10180% with 85 lines in your changes are missing coverage. Please review.

Project coverage is 76.69%. Comparing base (62630c7) to head (88cbba4).

Additional details and impacted files 
@@            Coverage Diff             @@
##             main     #110      +/-   ##
==========================================
- Coverage   79.37%   76.69%   -2.68%     
==========================================
  Files          21       23       +2     
  Lines        1687     1802     +115     
==========================================
+ Hits         1339     1382      +43     
- Misses        348      420      +72
Files Coverage Δ
src/defs/annonars_variant.py 100.00% <100.00%> (ø)
src/defs/auto_acmg.py 98.75% <100.00%> (+0.83%) ⬆️
src/criteria/auto_ps1_pm5.py 66.66% <66.66%> (ø)
src/auto_acmg.py 88.15% <84.61%> (+17.68%) ⬆️
src/criteria/auto_ba1_bs1_bs2_pm2.py 23.80% <0.00%> (ø)
src/criteria/auto_pm4_bp3.py 34.69% <34.69%> (ø)
src/criteria/auto_criteria.py 26.98% <26.98%> (ø)

@gromdimon gromdimon merged commit 959fd14 into main May 27, 2024
4 of 5 checks passed
@gromdimon gromdimon deleted the 109-unify-autoacmg-methods branch May 27, 2024 15:50
gromdimon added a commit that referenced this pull request Aug 2, 2024
@gromdimon
Unify auto-acmg methods (#110)
b753732 
* refactoring

* docs

* isolate criteria
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Unify AutoACMG methods
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@gromdimon