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Restructure seqvar pvs1 computation logic #27

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merged 6 commits into from
Apr 10, 2024

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Issue:

Description:

  • Add mixins
  • Add tests

@gromdimon gromdimon linked an issue Apr 10, 2024 that may be closed by this pull request
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codecov bot commented Apr 10, 2024

Codecov Report

Attention: Patch coverage is 30.29197% with 191 lines in your changes are missing coverage. Please review.

Project coverage is 63.19%. Comparing base (9ef5d82) to head (d808fa5).

Additional details and impacted files
@@            Coverage Diff             @@
##             main      #27      +/-   ##
==========================================
- Coverage   63.91%   63.19%   -0.73%     
==========================================
  Files          15       14       -1     
  Lines         884      959      +75     
==========================================
+ Hits          565      606      +41     
- Misses        319      353      +34     
Files Coverage Δ
src/types/autopvs1.py 100.00% <100.00%> (ø)
src/autoPVS1.py 30.95% <7.14%> (+11.28%) ⬆️
src/seqvar_pvs1.py 15.22% <14.83%> (-1.25%) ⬇️

@gromdimon gromdimon merged commit 06c62fa into main Apr 10, 2024
3 of 4 checks passed
@gromdimon gromdimon deleted the 24-restructure-seqvar_pvs1-file branch April 11, 2024 16:17
gromdimon added a commit that referenced this pull request Aug 2, 2024
* rename example_variants.txt

* Add data mixin

* Add small computation blocks mixin

* Move fetching transcripts to seqvar class

* Move enums to types

* delete enums.py
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Restructure seqvar_pvs1 file
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