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Add more tests for functionality with annonars #91

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gromdimon
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Issue:

Description:

  • Add more tests and restrucure the code

@gromdimon gromdimon linked an issue Apr 30, 2024 that may be closed by this pull request
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codecov bot commented Apr 30, 2024

Codecov Report

Attention: Patch coverage is 79.51807% with 17 lines in your changes are missing coverage. Please review.

Project coverage is 79.66%. Comparing base (62638e2) to head (597ac99).

❗ Current head 597ac99 differs from pull request most recent head 415675a. Consider uploading reports for the commit 415675a to get more accurate results

Additional details and impacted files
@@            Coverage Diff             @@
##             main      #91      +/-   ##
==========================================
+ Coverage   74.78%   79.66%   +4.87%     
==========================================
  Files          17       17              
  Lines        1154     1180      +26     
==========================================
+ Hits          863      940      +77     
+ Misses        291      240      -51     
Files Coverage Δ
src/defs/autopvs1.py 100.00% <100.00%> (ø)
src/pvs1/seqvar_pvs1.py 69.14% <78.48%> (+16.94%) ⬆️

@gromdimon gromdimon merged commit c054e97 into main Apr 30, 2024
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@gromdimon gromdimon deleted the 55-adapt-methods-of-seqvarpvs1helper-to-new-annonars-pydantic-models branch May 22, 2024 13:33
gromdimon added a commit that referenced this pull request Aug 2, 2024
* change structure of tests data

* Restructure methods for better unit testing

* Implement tests

* Tests for alternative_start_codon
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Adapt methods of SeqVarPVS1Helper to new annonars pydantic models
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