23.12.1 #296

HadleyKing · 2024-01-31T14:28:50Z

No description provided.

- one to submit and one to retreive Changes to be committed: new file: server/authentication/selectors.py modified: server/authentication/services.py modified: server/bcodb/admin.py modified: server/bcodb/apis.py modified: server/bcodb/models.py modified: server/bcodb/services.py modified: server/bcodb/urls.py modified: server/portaluserdb/settings.py modified: server/portaluserdb/urls.py modified: server/requirements.txt

Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/services/bco.service.js modified: client/src/slices/bcoSlice.js

Changes to be committed: modified: server/authentication/services.py modified: server/bcodb/apis.py modified: server/bcodb/urls.py

Changes to be committed: modified: client/src/components/builder/provenanceDomain.js

- add ORCID support for authentication in `/authentication/services.py` - customized Django Admin for BCODB and BCO in `bcodb/admin.py` - Updates to model in `bcodb/apis.py` - Update to API function name in `bcodb/urls.py` Changes to be committed: modified: server/authentication/services.py modified: server/bcodb/admin.py modified: server/bcodb/apis.py new file: server/bcodb/migrations/0007_bco.py modified: server/bcodb/models.py modified: server/bcodb/urls.py

Fix #246 Changes to be committed: modified: server/bcodb/apis.py new file: server/tests/fixtures/testing_example_bcos.json new file: server/tests/test_views/test_draft_bco_add.py

Fix #247 Changes to be committed: modified: server/authentication/selectors.py modified: server/bcodb/apis.py modified: server/tests/fixtures/testing_data.json modified: server/tests/test_views/test_draft_bco_add.py new file: server/tests/test_views/test_draft_bco_get.py

Fix #248 Changes to be committed: modified: server/authentication/selectors.py modified: server/authentication/services.py modified: server/bcodb/apis.py modified: server/bcodb/services.py modified: server/bcodb/urls.py modified: server/portaluserdb/settings.py new file: server/tests/test_views/test_draft_bco_delete.py modified: server/tests/test_views/test_draft_bco_get.py

Fix #207 Changes to be committed: new file: .github/workflows/django.yml

Changes to be committed: modified: .github/workflows/django.yml

Changes to be committed: modified: server/authentication/selectors.py modified: server/authentication/services.py modified: server/bcodb/apis.py modified: server/portaluserdb/settings.py modified: server/tests/test_views/test_draft_bco_delete.py modified: server/tests/test_views/test_draft_bco_get.py

Changes to be committed: modified: client/src/components/builder/components.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/layouts/shared/ToolsDropDown.js

Changes to be committed: modified: client/package-lock.json modified: client/package.json modified: client/src/App.css modified: client/src/App.js modified: client/src/components/about/BCOnexus.js modified: client/src/components/about/MeetOurTeam.js

Changes to be committed: modified: client/src/components/about/Overview.js modified: client/src/components/about/SB.js modified: client/src/components/about/Story.js

Changes to be committed: modified: client/src/App.css modified: client/src/components/home/BcoDb.js modified: client/src/components/home/BioComputeResources.js modified: client/src/components/home/Builder.js modified: client/src/components/home/Documentation.js modified: client/src/components/home/FdaBox.js modified: client/src/components/home/Galaxy.js modified: client/src/components/home/Hive.js modified: client/src/components/home/Intro.js modified: client/src/components/home/NewsBar.js modified: client/src/components/home/Specification.js modified: client/src/components/home/Tsc.js modified: client/src/components/home/Workshop.js modified: client/src/components/home/index.js

Changes to be committed: modified: client/src/components/account/Servers.js modified: client/src/components/bcodbs/SearchResults.js modified: client/src/components/resources/Builder.js modified: client/src/components/resources/DNAnexus.js modified: client/src/components/resources/Galaxy.js modified: client/src/components/resources/Hive.js modified: client/src/components/resources/Packages.js modified: client/src/components/resources/index.js

Changes to be committed: modified: client/src/components/builder/components.js modified: client/src/components/builder/descriptionDomain.js modified: client/src/components/builder/errorDomain.js modified: client/src/components/builder/executionDomain.js modified: client/src/components/builder/extensionDomain.js modified: client/src/components/builder/index.js modified: client/src/components/builder/ioDomain.js modified: client/src/components/builder/parametricDomain.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/components/builder/rawJson.js modified: client/src/components/builder/reviewer.js modified: client/src/components/builder/specialFeilds.js modified: client/src/components/builder/treeView.js modified: client/src/components/builder/usabilityDomain.js

Changes to be committed: modified: client/src/components/resources/CGC.js modified: client/src/components/resources/Citations.js

Changes to be committed: modified: client/src/index.html modified: client/src/layouts/MainNavBar.js modified: client/src/layouts/ObjectNavBar.js

Changes to be committed: modified: server/tests/fixtures/testing_data.json

Fix #276 Changes to be committed: modified: server/authentication/apis.py new file: server/tests/test_views/test_orcid_auth.py

Changes to be committed: modified: client/src/components/builder/index.js modified: server/authentication/apis.py modified: server/authentication/selectors.py

When a user changes or adds an ORCID to their account it should require validation to save it. This was a fix for #90 in 23.07. Somehow it was reverted and needed to be added again. Changes to be committed: modified: client/src/components/account/Profile.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py modified: server/bcodb/services.py

- /orcid/add/ - /orcid/remove/ Changes to be committed: modified: server/authentication/apis.py new file: server/tests/test_views/test_orcid_add.py modified: server/tests/test_views/test_orcid_auth.py new file: server/tests/test_views/test_orcid_remove.py modified: server/users/selectors.py

Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/urls.py modified: server/prefix/apis.py

Changes to be committed: modified: client/src/components/account/index.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js

Changes to be committed: modified: client/src/components/auth/Login.js modified: client/src/slices/accountSlice.js

Changes to be committed: modified: client/src/components/bcodbs/SearchResults.js

Changes to be committed: modified: client/src/components/home/FdaBox.js deleted: client/src/components/home/NewsBar.js modified: client/src/components/home/index.js modified: server/.secrets.example

gitguardian · 2024-01-31T14:29:28Z

⚠️ GitGuardian has uncovered 2 secrets following the scan of your pull request.

Please consider investigating the findings and remediating the incidents. Failure to do so may lead to compromising the associated services or software components.

🔎 Detected hardcoded secrets in your pull request

GitGuardian id	GitGuardian status	Secret	Commit	Filename
5477442	Triggered	Generic High Entropy Secret	`9da8304`	server/tests/fixtures/testing_data.json	View secret
8267001	Triggered	Generic High Entropy Secret	`9da8304`	server/tests/fixtures/testing_data.json	View secret

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Update for "Temp Draft" submission Changes to be committed: modified: server/bcodb/apis.py

Changes to be committed: modified: server/tests/test_views/test_draft_bco_add.py

HadleyKing and others added 30 commits November 29, 2023 10:47

Add functions to retreive Temp Draft

8ad908c

Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/services/bco.service.js modified: client/src/slices/bcoSlice.js

Refine request and response for AddTempDraftBcoAPI

d14b214

Changes to be committed: modified: server/authentication/services.py modified: server/bcodb/apis.py modified: server/bcodb/urls.py

Updates to ProvD form checking

8426513

Changes to be committed: modified: client/src/components/builder/provenanceDomain.js

Add test for Temp BCO Add

1b60cd9

Fix #246 Changes to be committed: modified: server/bcodb/apis.py new file: server/tests/fixtures/testing_example_bcos.json new file: server/tests/test_views/test_draft_bco_add.py

Added testing CI

037df3f

Fix #207 Changes to be committed: new file: .github/workflows/django.yml

Fix path errors

78da7e3

Changes to be committed: modified: .github/workflows/django.yml

Path Again

71ce287

Changes to be committed: modified: .github/workflows/django.yml

d

f035aa2

again

f92c5b3

debugging

4a171a9

debug

f14ae3e

deb

144a4d2

added secrets

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Changes to be committed: modified: .github/workflows/django.yml

s

d8d1371

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8cdcda1

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17d3a24

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Fix validation issues with removeEmptyValues function

c56017f

Changes to be committed: modified: client/src/components/builder/components.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/layouts/shared/ToolsDropDown.js

UPdate docs

159c800

Update localDeployment.md

2af565f

CSS and organization fixes

491376d

Changes to be committed: modified: client/package-lock.json modified: client/package.json modified: client/src/App.css modified: client/src/App.js modified: client/src/components/about/BCOnexus.js modified: client/src/components/about/MeetOurTeam.js

Css implementation

f197947

Changes to be committed: modified: client/src/components/about/Overview.js modified: client/src/components/about/SB.js modified: client/src/components/about/Story.js

HadleyKing added 15 commits December 19, 2023 15:32

slice fix

906098e

more resources updates

9e92d5f

Changes to be committed: modified: client/src/components/resources/CGC.js modified: client/src/components/resources/Citations.js

Index css

afa323d

Changes to be committed: modified: client/src/index.html modified: client/src/layouts/MainNavBar.js modified: client/src/layouts/ObjectNavBar.js

testdata update

9da8304

Changes to be committed: modified: server/tests/fixtures/testing_data.json

Add ORCID Auth api

7443484

Fix #276 Changes to be committed: modified: server/authentication/apis.py new file: server/tests/test_views/test_orcid_auth.py

Fixes for Playbook integration

74613b8

Changes to be committed: modified: client/src/components/builder/index.js modified: server/authentication/apis.py modified: server/authentication/selectors.py

Updates for Swagger and Logout

1c82bc8

Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/urls.py modified: server/prefix/apis.py

Add logout endpoint for client

d81ef57

Changes to be committed: modified: client/src/components/account/index.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js

Error Handling for auth failure #256

309ce90

Changes to be committed: modified: client/src/components/auth/Login.js modified: client/src/slices/accountSlice.js

Disable select box on BCO search page

4e83c4a

Changes to be committed: modified: client/src/components/bcodbs/SearchResults.js

Remove Twitter NewsBar

f7c1399

Changes to be committed: modified: client/src/components/home/FdaBox.js deleted: client/src/components/home/NewsBar.js modified: client/src/components/home/index.js modified: server/.secrets.example

HadleyKing and others added 2 commits January 31, 2024 09:29

Merge branch 'main' into 23.12.1

ac44b2d

Update for Playbook draft.ts

ae4ebac

Update for "Temp Draft" submission Changes to be committed: modified: server/bcodb/apis.py

tiwa1154 approved these changes Feb 14, 2024

View reviewed changes

Modified tests for merge

76f4c92

Changes to be committed: modified: server/tests/test_views/test_draft_bco_add.py

HadleyKing merged commit 769d35c into main Feb 14, 2024
2 checks passed

HadleyKing deleted the 23.12.1 branch February 14, 2024 19:36

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23.12.1 #296

23.12.1 #296

HadleyKing commented Jan 31, 2024

gitguardian bot commented Jan 31, 2024 •

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23.12.1 #296

23.12.1 #296

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HadleyKing commented Jan 31, 2024

gitguardian bot commented Jan 31, 2024 • edited Loading

⚠️ GitGuardian has uncovered 2 secrets following the scan of your pull request.

gitguardian bot commented Jan 31, 2024 •

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