Changing ORCID should require validation #90
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HadleyKing
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Jun 8, 2023
Fix #90 Changes to be committed: modified: client/src/components/account/Profile.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js
HadleyKing
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Jun 8, 2023
Fix #90 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/urls.py modified: server/bcodb/services.py
HadleyKing
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Jun 8, 2023
updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py
HadleyKing
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Jun 8, 2023
updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py
HadleyKing
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Jun 8, 2023
* Add Orcid User Info Api Fix biocompute-objects/playbook-partnership#16 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py * Typo fix Changes to be committed: modified: client/src/components/bcodbs/SearchOptions.js * Update services.py move `now = make_aware(datetime.utcnow())` to top * 1st round of changes Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/components/builder/preview.js modified: client/src/components/viewer/cardViews.js modified: client/src/components/viewer/index.js modified: client/src/layouts/MainLayout/index.js * GA4 added * Add resetToken API for server For biocompute-objects/bco_api#158 Changes to be committed: modified: server/bcodb/apis.py modified: server/bcodb/services.py modified: server/bcodb/urls.py * Token reset button for the client Fix biocompute-objects/bco_api#158 * Add functions for ORCID authentication Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py modified: server/bcodb/services.py modified: server/users/apis.py * Add/Remove ORCID for UI Fix #90 Changes to be committed: modified: client/src/components/account/Profile.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js * Add/Remove ORCID for server Fix #90 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/urls.py modified: server/bcodb/services.py --------- Co-authored-by: tianywan819 <[email protected]>
HadleyKing
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Jun 9, 2023
* GA4 added * Add Orcid User Info Api Fix biocompute-objects/playbook-partnership#16 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py * Typo fix Changes to be committed: modified: client/src/components/bcodbs/SearchOptions.js * Update services.py move `now = make_aware(datetime.utcnow())` to top * Security fixes (#115) * Add Orcid User Info Api Fix biocompute-objects/playbook-partnership#16 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py * Typo fix Changes to be committed: modified: client/src/components/bcodbs/SearchOptions.js * Update services.py move `now = make_aware(datetime.utcnow())` to top * 1st round of changes Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/components/builder/preview.js modified: client/src/components/viewer/cardViews.js modified: client/src/components/viewer/index.js modified: client/src/layouts/MainLayout/index.js * GA4 added * Add resetToken API for server For biocompute-objects/bco_api#158 Changes to be committed: modified: server/bcodb/apis.py modified: server/bcodb/services.py modified: server/bcodb/urls.py * Token reset button for the client Fix biocompute-objects/bco_api#158 * Add functions for ORCID authentication Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py modified: server/bcodb/services.py modified: server/users/apis.py * Add/Remove ORCID for UI Fix #90 Changes to be committed: modified: client/src/components/account/Profile.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js * Add/Remove ORCID for server Fix #90 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/urls.py modified: server/bcodb/services.py --------- Co-authored-by: tianywan819 <[email protected]> * Icons portalupdate (#107) * GA4 added * For demostration use, updated GA4, updated Navigation header icons --------- Co-authored-by: tianywan819 <[email protected]> * Derive from Published Fix #118 Changes to be committed: modified: client/src/components/viewer/index.js modified: client/src/slices/bcoSlice.js * Implement Derive From Function Builder Fix #117 Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/components/viewer/index.js --------- Co-authored-by: tianywan819 <[email protected]>
|
23.07 testing shows that ORCID login is not working. In addition, the ORCID validation is not working as well. Error message: "Redirect URI mismatch" |
HadleyKing
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Jul 19, 2023
updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py
HadleyKing
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Jul 19, 2023
* Add Orcid User Info Api Fix biocompute-objects/playbook-partnership#16 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py * Typo fix Changes to be committed: modified: client/src/components/bcodbs/SearchOptions.js * Update services.py move `now = make_aware(datetime.utcnow())` to top * 1st round of changes Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/components/builder/preview.js modified: client/src/components/viewer/cardViews.js modified: client/src/components/viewer/index.js modified: client/src/layouts/MainLayout/index.js * GA4 added * Security fixes (#115) * Add Orcid User Info Api Fix biocompute-objects/playbook-partnership#16 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py * Typo fix Changes to be committed: modified: client/src/components/bcodbs/SearchOptions.js * Update services.py move `now = make_aware(datetime.utcnow())` to top * 1st round of changes Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/components/builder/preview.js modified: client/src/components/viewer/cardViews.js modified: client/src/components/viewer/index.js modified: client/src/layouts/MainLayout/index.js * GA4 added * Add resetToken API for server For biocompute-objects/bco_api#158 Changes to be committed: modified: server/bcodb/apis.py modified: server/bcodb/services.py modified: server/bcodb/urls.py * Token reset button for the client Fix biocompute-objects/bco_api#158 * Add functions for ORCID authentication Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py modified: server/bcodb/services.py modified: server/users/apis.py * Add/Remove ORCID for UI Fix #90 Changes to be committed: modified: client/src/components/account/Profile.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js * Add/Remove ORCID for server Fix #90 Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/urls.py modified: server/bcodb/services.py --------- Co-authored-by: tianywan819 <[email protected]> * Icons portalupdate (#107) * GA4 added * For demostration use, updated GA4, updated Navigation header icons --------- Co-authored-by: tianywan819 <[email protected]> * Derive from Published Fix #118 Changes to be committed: modified: client/src/components/viewer/index.js modified: client/src/slices/bcoSlice.js * Implement Derive From Function Builder Fix #117 Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/components/viewer/index.js * Add XRefs to builder Changes to be committed: modified: client/src/components/builder/descriptionDomain.js modified: server/admin/db.sqlite3.dev modified: server/authentication/apis.py * Inaccurate modified time in Provenance Domain Fix #112 Changes to be committed: modified: client/src/components/builder/descriptionDomain.js modified: client/src/components/builder/executionDomain.js modified: client/src/components/builder/extensionDomain.js modified: client/src/components/builder/index.js modified: client/src/components/builder/ioDomain.js modified: client/src/components/builder/parametricDomain.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/components/builder/rawJson.js renamed: client/src/components/builder/preview.js -> client/src/components/builder/treeView.js modified: client/src/components/builder/usabilityDomain.js modified: client/src/slices/bcoSlice.js * Next button (#128) * GA4 added * For demostration use, updated GA4, updated Navigation header icons * Changed all SAVE button to Next on the Builder page --------- Co-authored-by: tianywan819 <[email protected]> Co-authored-by: Hadley King <[email protected]> * Update domain buttons Fix #110, Fix #113 Changes to be committed: modified: client/src/components/builder/components.js modified: client/src/components/builder/descriptionDomain.js modified: client/src/components/builder/extensionDomain.js modified: client/src/components/builder/index.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/components/builder/usabilityDomain.js modified: client/src/components/home/index.js --------- Co-authored-by: tianywan819 <[email protected]> Co-authored-by: Tianyi Wang <[email protected]>
HadleyKing
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Jul 26, 2023
updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py
HadleyKing
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Jul 27, 2023
* unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Hadley King <[email protected]> Co-authored-by: hadleyking <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
HadleyKing
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Jul 27, 2023
* Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * added new test file- api/auth/remove.py (#196) * unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Hadley King <[email protected]> Co-authored-by: hadleyking <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]>
HadleyKing
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Jul 27, 2023
* unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged * new bracnh for conflict resolution Changes to be committed: modified: .github/workflows/django.yml modified: tests/test_views/test_api_objects_drafts_create.py * update (#198) * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * added new test file- api/auth/remove.py (#196) * unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Hadley King <[email protected]> Co-authored-by: hadleyking <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Reeya Gupta <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]>
HadleyKing
added a commit
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Jul 27, 2023
* unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged * new bracnh for conflict resolution Changes to be committed: modified: .github/workflows/django.yml modified: tests/test_views/test_api_objects_drafts_create.py * update (#198) * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * added new test file- api/auth/remove.py (#196) * unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Hadley King <[email protected]> Co-authored-by: hadleyking <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]> * Fix Swagger for `GET_published_object_by_id` * tests and documentation for 'get_object_id' Fix #178 --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Reeya Gupta <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]>
HadleyKing
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to biocompute-objects/bco_api
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Oct 17, 2023
* unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged * new bracnh for conflict resolution Changes to be committed: modified: .github/workflows/django.yml modified: tests/test_views/test_api_objects_drafts_create.py * update (#198) * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * added new test file- api/auth/remove.py (#196) * unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Hadley King <[email protected]> Co-authored-by: hadleyking <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Reeya Gupta <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]>
HadleyKing
added a commit
to biocompute-objects/bco_api
that referenced
this issue
Oct 17, 2023
* unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged * new bracnh for conflict resolution Changes to be committed: modified: .github/workflows/django.yml modified: tests/test_views/test_api_objects_drafts_create.py * update (#198) * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * added new test file- api/auth/remove.py (#196) * unit tests test_fixtures.py - Exports the database as a pytest fixture that can be used for testing * Add files via upload * New api test files * Fixed test_api_accounts_describe Changes to be committed: modified: api/apps.py modified: api/model/groups.py modified: api/model/prefix.py deleted: api/tests/test_bcos.json deleted: api/tests/test_forms.py deleted: api/tests/test_group_post_api.py deleted: api/tests/test_model_bco.py deleted: api/tests/test_model_groups.py deleted: api/tests/test_model_prefix.py deleted: api/tests/test_model_user.py deleted: api/tests/test_prefix_post_api.py deleted: api/tests/test_views.py deleted: api/tests_automated.py modified: api/views.py modified: bcodb/settings.py renamed: api/tests/__init__.py -> tests/__init__.py new file: tests/fixtures/test_data.json modified: tests/test_fixtures.py new file: tests/test_views/__init__.py modified: tests/test_views/test_api_accounts_describe.py * Fix Bulk Publish function Changes to be committed: modified: api/scripts/method_specific/POST_api_objects_publish.py modified: api/scripts/utilities/JsonUtils.py * Add reset_token API Issue #158 * Formatting for Add/Remove ORCID updated dev DB Related to biocompute-objects/portal_userdb#90 Changes to be committed: modified: admin_only/db.sqlite3.dev modified: authentication/apis.py * Fix #134 Changes to be committed: modified: authentication/services.py * Bump django from 3.2.10 to 3.2.13 Bumps [django](https://github.com/django/django) from 3.2.10 to 3.2.13. - [Release notes](https://github.com/django/django/releases) - [Commits](django/django@3.2.10...3.2.13) --- updated-dependencies: - dependency-name: django dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * new test - auth/remove * conflicts solved and merged --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Hadley King <[email protected]> Co-authored-by: hadleyking <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]> * Fix Swagger for `GET_published_object_by_id` * tests and documentation for 'get_object_id' Fix #178 --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Reeya Gupta <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Reeya Gupta <[email protected]>
HadleyKing
added a commit
that referenced
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Jan 11, 2024
When a user changes or adds an ORCID to their account it should require validation to save it. This was a fix for #90 in 23.07. Somehow it was reverted and needed to be added again. Changes to be committed: modified: client/src/components/account/Profile.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py modified: server/bcodb/services.py
HadleyKing
added a commit
that referenced
this issue
Jan 11, 2024
When a user changes or adds an ORCID to their account it should require validation to save it. This was a fix for #90 in 23.07. Somehow it was reverted and needed to be added again. Changes to be committed: modified: client/src/components/account/Profile.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py modified: server/bcodb/services.py
HadleyKing
added a commit
that referenced
this issue
Feb 14, 2024
* Add BCO API endpoints for UserDB - one to submit and one to retreive Changes to be committed: new file: server/authentication/selectors.py modified: server/authentication/services.py modified: server/bcodb/admin.py modified: server/bcodb/apis.py modified: server/bcodb/models.py modified: server/bcodb/services.py modified: server/bcodb/urls.py modified: server/portaluserdb/settings.py modified: server/portaluserdb/urls.py modified: server/requirements.txt * Add functions to retreive Temp Draft Changes to be committed: modified: client/src/components/builder/index.js modified: client/src/services/bco.service.js modified: client/src/slices/bcoSlice.js * Refine request and response for AddTempDraftBcoAPI Changes to be committed: modified: server/authentication/services.py modified: server/bcodb/apis.py modified: server/bcodb/urls.py * Updates to ProvD form checking Changes to be committed: modified: client/src/components/builder/provenanceDomain.js * Update BCO model and polish for apis - add ORCID support for authentication in `/authentication/services.py` - customized Django Admin for BCODB and BCO in `bcodb/admin.py` - Updates to model in `bcodb/apis.py` - Update to API function name in `bcodb/urls.py` Changes to be committed: modified: server/authentication/services.py modified: server/bcodb/admin.py modified: server/bcodb/apis.py new file: server/bcodb/migrations/0007_bco.py modified: server/bcodb/models.py modified: server/bcodb/urls.py * Add test for Temp BCO Add Fix #246 Changes to be committed: modified: server/bcodb/apis.py new file: server/tests/fixtures/testing_example_bcos.json new file: server/tests/test_views/test_draft_bco_add.py * Test for Get Temp BCO Fix #247 Changes to be committed: modified: server/authentication/selectors.py modified: server/bcodb/apis.py modified: server/tests/fixtures/testing_data.json modified: server/tests/test_views/test_draft_bco_add.py new file: server/tests/test_views/test_draft_bco_get.py * Add test for Temp BCO Delete Fix #248 Changes to be committed: modified: server/authentication/selectors.py modified: server/authentication/services.py modified: server/bcodb/apis.py modified: server/bcodb/services.py modified: server/bcodb/urls.py modified: server/portaluserdb/settings.py new file: server/tests/test_views/test_draft_bco_delete.py modified: server/tests/test_views/test_draft_bco_get.py * Added testing CI Fix #207 Changes to be committed: new file: .github/workflows/django.yml * Fix path errors Changes to be committed: modified: .github/workflows/django.yml * Path Again Changes to be committed: modified: .github/workflows/django.yml * d * again * debugging * debug * deb * added secrets Changes to be committed: modified: .github/workflows/django.yml * s * s * s * s * s * s * Adjusted CustomJSONWebTokenAuthentication for CI Changes to be committed: modified: server/authentication/selectors.py modified: server/authentication/services.py modified: server/bcodb/apis.py modified: server/portaluserdb/settings.py modified: server/tests/test_views/test_draft_bco_delete.py modified: server/tests/test_views/test_draft_bco_get.py * Fix validation issues with removeEmptyValues function Changes to be committed: modified: client/src/components/builder/components.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/layouts/shared/ToolsDropDown.js * UPdate docs * Update localDeployment.md * CSS and organization fixes Changes to be committed: modified: client/package-lock.json modified: client/package.json modified: client/src/App.css modified: client/src/App.js modified: client/src/components/about/BCOnexus.js modified: client/src/components/about/MeetOurTeam.js * Css implementation Changes to be committed: modified: client/src/components/about/Overview.js modified: client/src/components/about/SB.js modified: client/src/components/about/Story.js * Home page css Changes to be committed: modified: client/src/App.css modified: client/src/components/home/BcoDb.js modified: client/src/components/home/BioComputeResources.js modified: client/src/components/home/Builder.js modified: client/src/components/home/Documentation.js modified: client/src/components/home/FdaBox.js modified: client/src/components/home/Galaxy.js modified: client/src/components/home/Hive.js modified: client/src/components/home/Intro.js modified: client/src/components/home/NewsBar.js modified: client/src/components/home/Specification.js modified: client/src/components/home/Tsc.js modified: client/src/components/home/Workshop.js modified: client/src/components/home/index.js * css for resources page Changes to be committed: modified: client/src/components/account/Servers.js modified: client/src/components/bcodbs/SearchResults.js modified: client/src/components/resources/Builder.js modified: client/src/components/resources/DNAnexus.js modified: client/src/components/resources/Galaxy.js modified: client/src/components/resources/Hive.js modified: client/src/components/resources/Packages.js modified: client/src/components/resources/index.js * slice fix * Builder css Changes to be committed: modified: client/src/components/builder/components.js modified: client/src/components/builder/descriptionDomain.js modified: client/src/components/builder/errorDomain.js modified: client/src/components/builder/executionDomain.js modified: client/src/components/builder/extensionDomain.js modified: client/src/components/builder/index.js modified: client/src/components/builder/ioDomain.js modified: client/src/components/builder/parametricDomain.js modified: client/src/components/builder/provenanceDomain.js modified: client/src/components/builder/rawJson.js modified: client/src/components/builder/reviewer.js modified: client/src/components/builder/specialFeilds.js modified: client/src/components/builder/treeView.js modified: client/src/components/builder/usabilityDomain.js * more resources updates Changes to be committed: modified: client/src/components/resources/CGC.js modified: client/src/components/resources/Citations.js * Index css Changes to be committed: modified: client/src/index.html modified: client/src/layouts/MainNavBar.js modified: client/src/layouts/ObjectNavBar.js * testdata update Changes to be committed: modified: server/tests/fixtures/testing_data.json * Add ORCID Auth api Fix #276 Changes to be committed: modified: server/authentication/apis.py new file: server/tests/test_views/test_orcid_auth.py * Fixes for Playbook integration Changes to be committed: modified: client/src/components/builder/index.js modified: server/authentication/apis.py modified: server/authentication/selectors.py * Changing ORCID should require validation When a user changes or adds an ORCID to their account it should require validation to save it. This was a fix for #90 in 23.07. Somehow it was reverted and needed to be added again. Changes to be committed: modified: client/src/components/account/Profile.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js modified: server/authentication/apis.py modified: server/authentication/services.py modified: server/authentication/urls.py modified: server/bcodb/services.py * Add tests for new APIs and Swagger Docs - /orcid/add/ - /orcid/remove/ Changes to be committed: modified: server/authentication/apis.py new file: server/tests/test_views/test_orcid_add.py modified: server/tests/test_views/test_orcid_auth.py new file: server/tests/test_views/test_orcid_remove.py modified: server/users/selectors.py * Updates for Swagger and Logout Changes to be committed: modified: server/authentication/apis.py modified: server/authentication/urls.py modified: server/prefix/apis.py * Add logout endpoint for client Changes to be committed: modified: client/src/components/account/index.js modified: client/src/services/auth.service.js modified: client/src/slices/accountSlice.js * Error Handling for auth failure #256 Changes to be committed: modified: client/src/components/auth/Login.js modified: client/src/slices/accountSlice.js * Disable select box on BCO search page Changes to be committed: modified: client/src/components/bcodbs/SearchResults.js * Remove Twitter NewsBar Changes to be committed: modified: client/src/components/home/FdaBox.js deleted: client/src/components/home/NewsBar.js modified: client/src/components/home/index.js modified: server/.secrets.example * Update for Playbook draft.ts Update for "Temp Draft" submission Changes to be committed: modified: server/bcodb/apis.py * Modified tests for merge Changes to be committed: modified: server/tests/test_views/test_draft_bco_add.py --------- Co-authored-by: Tianyi Wang <[email protected]>
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When a user changes or adds an ORCID to their account it should require validation to save it.
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