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Update peaks2utr to 1.3.2 #50979

Merged
merged 1 commit into from
Sep 26, 2024
Merged

Update peaks2utr to 1.3.2 #50979

merged 1 commit into from
Sep 26, 2024

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@BiocondaBot BiocondaBot commented Sep 26, 2024

Update peaks2utr: 1.3.01.3.2

install with bioconda Conda

Info Link or Description
Recipe recipes/peaks2utr (click to view/edit other files)
Summary A robust, parallelized Python CLI for annotating three_prime_UTR
Home https://github.com/haessar/peaks2utr
Releases https://pypi.org/pypi/peaks2utr/json

This pull request was automatically generated (see docs).

Summary by CodeRabbit

  • New Features
    • Updated the peaks2utr package to version 1.3.2, enhancing functionality and performance.
    • New source URL for the package tarball to reflect the updated version.
  • Bug Fixes
    • Updated SHA256 checksum for the source tarball to ensure integrity and security.

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Sep 26, 2024
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coderabbitai bot commented Sep 26, 2024

Walkthrough

The pull request updates the peaks2utr package by changing its version from "1.3.0" to "1.3.2". This includes modifications to the SHA256 checksum and the source URL to align with the new version. The build number remains unchanged.

Changes

Files Change Summary
recipes/peaks2utr/meta.yaml - Version updated from "1.3.0" to "1.3.2".
- SHA256 checksum updated.
- Source URL updated to point to the new version's tarball.

Poem

In the garden of code, a new version blooms,
From "one point three" to "two", it zooms!
With checksums adjusted and URLs bright,
The peaks2utr hops into the light.
A leap for the package, a joyful cheer,
CodeRabbit sings, "The update is here!" 🐇✨


📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between d6403ea and b7b88c1.

📒 Files selected for processing (1)
  • recipes/peaks2utr/meta.yaml (1 hunks)
🔇 Additional comments (3)
recipes/peaks2utr/meta.yaml (3)

2-2: Version update looks good.

The version has been correctly updated from 1.3.0 to 1.3.2, which aligns with the PR objective.


9-9: URL and other aspects of the recipe look good.

The URL has been correctly updated to reflect the new version (1.3.2) due to the Jinja2 templating. As this is a minor version update, it's reasonable that no other changes to build instructions or dependencies were required. However, it might be worth double-checking if any new dependencies were introduced in this version update.

To verify if any new dependencies were introduced, you can run:

#!/bin/bash
# Description: Compare dependencies between versions 1.3.0 and 1.3.2

# Download both versions
curl -sL https://pypi.io/packages/source/p/peaks2utr/peaks2utr-1.3.0.tar.gz -o peaks2utr-1.3.0.tar.gz
curl -sL https://pypi.io/packages/source/p/peaks2utr/peaks2utr-1.3.2.tar.gz -o peaks2utr-1.3.2.tar.gz

# Extract and compare setup.py or pyproject.toml files
tar -xzf peaks2utr-1.3.0.tar.gz
tar -xzf peaks2utr-1.3.2.tar.gz

echo "Differences in setup.py or pyproject.toml:"
diff -u peaks2utr-1.3.0/setup.py peaks2utr-1.3.2/setup.py || \
diff -u peaks2utr-1.3.0/pyproject.toml peaks2utr-1.3.2/pyproject.toml

# Clean up
rm -rf peaks2utr-1.3.0 peaks2utr-1.3.1 peaks2utr-1.3.0.tar.gz peaks2utr-1.3.2.tar.gz

This script will show any differences in dependencies between the two versions. If there are no differences, no output will be produced.


10-10: Verify the SHA256 checksum.

The SHA256 checksum has been updated, which is necessary when changing the package version. However, we should verify that this checksum is correct for the new version 1.3.2 of peaks2utr.

Run the following script to verify the SHA256 checksum:

If the script output shows "OK", then the SHA256 checksum is correct.


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@BiocondaBot
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No artifacts found on the most recent builds. Either the builds failed, the artifacts have been removed due to age, or the recipe was blacklisted/skipped.

1 similar comment
@BiocondaBot
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No artifacts found on the most recent builds. Either the builds failed, the artifacts have been removed due to age, or the recipe was blacklisted/skipped.

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