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Bundle support for FeatureInputs, references; add CreateBundle tool. #4561

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Bundle support for FeatureInputs, references; add CreateBundle tool.

Bundle support for FeatureInputs, references; add CreateBundle tool. #4561

Triggered via pull request August 13, 2024 12:47
@cmnbroadcmnbroad
synchronize #8944
cn_vcf_bundles
Status Cancelled
Total duration 2m 10s
Artifacts –

gatk-tests.yml

on: pull_request
check if the environment has privileges
0s
check if the environment has privileges
build and push gatk docker to artifacts
1m 22s
build and push gatk docker to artifacts
Validate script WDLs using womtools
1m 5s
Validate script WDLs using womtools
Validate generated WDLs using womtools
1m 12s
Validate generated WDLs using womtools
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
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21 errors and 1 warning
Validate script WDLs using womtools
Process completed with exit code 1.
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
The run was canceled by @cmnbroad.
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
The operation was canceled.
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
The run was canceled by @cmnbroad.
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
The operation was canceled.
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
The run was canceled by @cmnbroad.
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
The operation was canceled.
Validate generated WDLs using womtools
The run was canceled by @cmnbroad.
Validate generated WDLs using womtools
The operation was canceled.
WDL test RUN_M2_WDL on cromwell
The run was canceled by @cmnbroad.
WDL test RUN_M2_WDL on cromwell
The operation was canceled.
Java 17.0.6+10 build and test cloud
The run was canceled by @cmnbroad.
Java 17.0.6+10 build and test cloud
The operation was canceled.
WDL test RUN_CNV_SOMATIC_WDL on cromwell
The run was canceled by @cmnbroad.
WDL test RUN_CNV_SOMATIC_WDL on cromwell
The operation was canceled.
build and push gatk docker to artifacts
The run was canceled by @cmnbroad.
build and push gatk docker to artifacts
The operation was canceled.
Java 17.0.6+10 build and test unit
The run was canceled by @cmnbroad.
Java 17.0.6+10 build and test unit
The operation was canceled.
Java 17.0.6+10 build and test integration
The run was canceled by @cmnbroad.
Java 17.0.6+10 build and test integration
The operation was canceled.
Validate script WDLs using womtools
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/setup-java@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/