Bundle support for FeatureInputs, references; add CreateBundle tool. #4561

Job	Run time
Validate script WDLs using womtools	1m 5s
Validate generated WDLs using womtools	1m 12s
check if the environment has privileges	1s
build and push gatk docker to artifacts	1m 22s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	1m 7s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	1m 9s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	1m 20s
WDL test RUN_M2_WDL on cromwell	1m 14s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1m 8s
Java 17.0.6+10 build and test cloud	1m 6s
Java 17.0.6+10 build and test integration	1m 50s
Java 17.0.6+10 build and test unit	1m 13s
Java ${{ matrix.Java }} test on docker ${{ matrix.testType }}	1s
	13m 48s

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