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import inside hints doesn't work #228

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mr-c opened this issue Nov 13, 2016 · 0 comments
Closed

import inside hints doesn't work #228

mr-c opened this issue Nov 13, 2016 · 0 comments

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@mr-c
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mr-c commented Nov 13, 2016

But it does work with requirements!

minimal.cwl

#!/usr/bin/env cwl-runner

cwlVersion: v1.0
class: CommandLineTool

hints:
- $import: envvar-global.yml

inputs: []
outputs: []
baseCommand: [echo]

/home/michael/workflows/env/bin/cwltool 1.0.20161113151412
Resolved 'minimal.cwl' to 'file:///home/michael/workflows/tools/minimal.cwl'
Tool definition failed validation:
Validating hint `EnvVarRequirement`: EnvVarRequirement record could not validate field `id` because it is not recognized and strict is True, valid fields are: class, envDef
could not validate field `name` because it is not recognized and strict is True, valid fields are: class, envDef
This was referenced Nov 15, 2016
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@mr-c mr-c closed this as completed in #232 Nov 18, 2016
qiukunlong pushed a commit to qiukunlong/cwltool that referenced this issue Mar 25, 2017
@mr-c
Merge pull request common-workflow-language#228 from common-workflow-…
c4cecad 
…language/scoped-ref-and-typedsl

Scoped ref and typedsl
qiukunlong pushed a commit to qiukunlong/cwltool that referenced this issue Mar 25, 2017
Squashed 'cwltool/schemas/' changes from 3e1b02c..a2263a9
7f979d8 
a2263a9 Make path/listing optional (sort of).
de7cb76 Add listing to directory type
57a5bc8 Fix last test using "args"
3cc79d2 Port draft-3 changes to command line generation tests to draft-4.
f2a18c3 Add missing args.py used by draft-3 tests.
ac17f5d Port draft-2 changes to command line generation tests to draft-3.
ddf417b Command line generation tests now work by executing a small script that copies the command line to the output.  Allows cwl-runner implementations to drop the --conformance-test code path.
c4cecad Merge pull request common-workflow-language#228 from common-workflow-language/scoped-ref-and-typedsl
d1d53b3 Merge pull request common-workflow-language#227 from common-workflow-language/stderr
0b987d3 add test
71e9b3d add stderr object
347c28e Merge pull request common-workflow-language#212 from common-workflow-language/cwl-runner-interface
28f64f0 clarify description
d791500 add output stanza, fix syntax
ee0bea3 add descriptions
04dfbf0 toolfile is optional
b1e740e bind and order the tool and jobfiles
81bd8de description
c7a2bf1 move to a better location
979453a initial description of cwl-runner interface

git-subtree-dir: cwltool/schemas
git-subtree-split: a2263a9
qiukunlong pushed a commit to qiukunlong/cwltool that referenced this issue Mar 25, 2017
@mr-c
Squashed 'cwltool/schemas/' changes from 3e1b02c..0c275b4
ef67193 
0c275b4 clarify that outputBinding must not be set
c30b79f finish restoring allowable types for parameters
06c9ba7 Merge pull request common-workflow-language#230 from common-workflow-language/stderr-out-types
cbd7bc2 only allow use of stderr/stdout shortcuts as types for the Outputs. Better place the docs
0ba703d jsonldPredicate did it!
a5a7516 nope, use an enum instead
24a611d use long ids?
52f6411 extend doc to stderr psuedotype
9d0fbe0 initial stdout & stderr shortcut support
392be2f fixing site build?
57a5bc8 Fix last test using "args"
3cc79d2 Port draft-3 changes to command line generation tests to draft-4.
f2a18c3 Add missing args.py used by draft-3 tests.
ac17f5d Port draft-2 changes to command line generation tests to draft-3.
ddf417b Command line generation tests now work by executing a small script that copies the command line to the output.  Allows cwl-runner implementations to drop the --conformance-test code path.
c4cecad Merge pull request common-workflow-language#228 from common-workflow-language/scoped-ref-and-typedsl
d1d53b3 Merge pull request common-workflow-language#227 from common-workflow-language/stderr
0b987d3 add test
71e9b3d add stderr object
347c28e Merge pull request common-workflow-language#212 from common-workflow-language/cwl-runner-interface
28f64f0 clarify description
d791500 add output stanza, fix syntax
ee0bea3 add descriptions
04dfbf0 toolfile is optional
b1e740e bind and order the tool and jobfiles
81bd8de description
c7a2bf1 move to a better location
979453a initial description of cwl-runner interface

git-subtree-dir: cwltool/schemas
git-subtree-split: 0c275b4
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