Skip to content

Issues: cortes-ciriano-lab/SComatic

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

22 Open 42 Closed
22 Open 42 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Failure of installing pybedtools and rpy2
#70 opened Nov 7, 2024 by LiuCanidk
Fig6 plot mutation data
#69 opened Nov 7, 2024 by seoyounglee6445
Plotting 96 trinucleotide mutation count
#67 opened Oct 4, 2024 by hl-xue
Step4.2 fails to output any variants from scATACseq data
#66 opened Oct 2, 2024 by archieandrews10
5
How to estimate single-cell mutational burdens
#65 opened Sep 18, 2024 by xyzheng123
3
Issue with betabinomial estimation?
#59 opened Jul 9, 2024 by danieljrichard
1
The problem of analysing single-cell data from multiple tissues of the same individual
#58 opened May 18, 2024 by zhoudreames
1
If the Scomatic could provide the variant allele frequency of unique cell
#56 opened Apr 25, 2024 by luhuan93
how does input the tsv file to MutationalPatterns
#55 opened Apr 13, 2024 by dipingxian431
How to remove the influence of different cell numbers
#54 opened Mar 22, 2024 by xinghua1001
Understanding step 4.2 variant filters
#53 opened Mar 1, 2024 by bkinnersley
1
How does SingleCellGenotype.py work and what does it mean if substantial number of cell have different expected and observed cell types?
#52 opened Feb 27, 2024 by prakashraaz
Mutational Burden Calculation
#51 opened Feb 23, 2024 by JakeJackson22
minimal number of cells required for each cell type
#50 opened Feb 21, 2024 by rosaranli
run SComatic with not FACS-sorted data
#49 opened Feb 12, 2024 by giorgiagandolfi
Issue while generating a custom PoN file
#48 opened Feb 6, 2024 by Swap90
2
Very low number of matched variants when comparing known SNVs from several studies with the results obtained by SComatic when applied to the same data
#45 opened Jan 8, 2024 by FranSoriano
4
How to separate normal and cancer cells from the same cell type?
#44 opened Nov 29, 2023 by cv55
Two questions; about 'Cell_type_noise' filter and MT mutation calling
#41 opened Nov 24, 2023 by leehs96
1
SComatic with a single cell type but with germline reference
#40 opened Nov 22, 2023 by northerngasc
Do I need estimate new Beta binomial parameters for each sample? Another: according to somatic mutation in epi cells select cancer cell
#36 opened Oct 31, 2023 by gloriafight
How to run the tool on multiple samples from the same patient
#34 opened Oct 20, 2023 by MigleMi
ProTip! Mix and match filters to narrow down what you’re looking for.