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Config file needs to be refurbished #55

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famosab opened this issue Jan 20, 2023 · 1 comment
Closed

Config file needs to be refurbished #55

famosab opened this issue Jan 20, 2023 · 1 comment
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documentation Improvements or additions to documentation enhancement New feature or request refactoring changes in the code functionality
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Good Documentation

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@famosab
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famosab commented Jan 20, 2023

Is your feature request related to a problem? Please describe.
The config.yaml file offers an easy way to use refineGEMs if you are not experienced with Python. However since adding a lot of functions it has gotten bigger and bigger and less concise.

Describe the solution you'd like
Easy to understand config file where all things can be entered or chosen.

Describe alternatives you've considered
We might also split the config files into files for the specific use cases. But that might make it more complicated.

Additional context
There is the documentation. Maybe it is enough to just expand there and/or write more context in the yaml file.
@famosab famosab added enhancement New feature or request documentation Improvements or additions to documentation labels Jan 20, 2023
@GwennyGit GwennyGit mentioned this issue Jan 31, 2023
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@GwennyGit GwennyGit added the refactoring changes in the code functionality label Jan 31, 2023
@famosab famosab added this to the Good Documentation milestone Feb 14, 2023
famosab added a commit that referenced this issue Mar 1, 2023
@famosab
make user enter their own config file #57 #55 #46
c46a646
famosab added a commit that referenced this issue Mar 1, 2023
@famosab
Merge pull request #69 from draeger-lab/config-update
ad5454e 
Make user enter their own config file #57 #55 #46
famosab added a commit that referenced this issue Mar 1, 2023
@famosab
generalize config #46 #55 #57
cedb3fd
famosab added a commit that referenced this issue Mar 1, 2023
@famosab
automated creation of config #55 #57
74f233c
famosab added a commit that referenced this issue Mar 1, 2023
@famosab
automated creation of config #55 #57
0f98ed8
famosab added a commit that referenced this issue Mar 1, 2023
@famosab
automated creation of config #55 #57
f323db8
famosab added a commit that referenced this issue Mar 1, 2023
@famosab
add docs #55 #57
08c1dbe
@famosab
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famosab commented Mar 1, 2023

Close since this is a duplicate of #57.

@famosab famosab closed this as completed Mar 1, 2023
famosab added a commit that referenced this issue Mar 1, 2023
@famosab
add docs #55 #57
b70212a
famosab added a commit that referenced this issue Mar 2, 2023
@famosab
set vis flag for all vis #55 #57
253449b
@famosab famosab mentioned this issue Mar 4, 2023
Merged
GwennyGit added a commit that referenced this issue Mar 8, 2023
@GwennyGit
Removed GFF & unnecessary lines in config.yaml for gapfill #55
ccbbf4a
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