fix logic w.r.t. enabling Python support in PETSc #2299
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Test report by @boegel Overview of tested easyconfigs (in order)
Build succeeded for 3 out of 3 (3 easyconfigs in total) |
branfosj
requested changes
Jan 4, 2021
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This has not fully solved the issue due to a bug. My test has:
./configure --prefix=/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/PETSc/3.11.0-foss-2018b-downloaded-deps --with-hdf5=1 --with-hdf5-dir=$EBROOTHDF5 --with-debugging --with-cxx-dialect=C++11 --download-hypre=1 --download-ptscotch=1 --download-mumps=1 --download-superlu_dist=1 --download-parmetis=1 --download-triangle=1 --download-suitesparse=1 --download-prometheus=1 --download-metis=1 --download-ml=1 --download-superlu=1 --download-hypre-shared=0 --download-metis-shared=0 --download-ml-shared=0 --download-mumps-shared=0 --download-parmetis-shared=0 --download-prometheus-shared=0 --download-ptscotch-shared=0 --download-suitesparse-shared=0 --download-superlu-shared=0 --download-superlu_dist-shared=0 --with-cc="mpicc" --with-cxx="mpicxx" --with-c++-support --with-fc="mpifort" --CFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC" --CXXFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC -DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX" --FFLAGS="-O2 -ftree-vectorize -march=native -fno-math-errno -fPIC" --with-mpi=1 --with-build-step-np=8 --with-shared-libraries=1 --with-debugging=0 --with-pic=1 --with-x=0 --with-windows-graphics=0 --with-numpy=1 --with-mpi4py=1 --with-fftw=1 --with-fftw-include=/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/FFTW/3.3.8-gompi-2018b/include --with-fftw-lib=[/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/FFTW/3.3.8-gompi-2018b/lib/libfftw3_mpi.a,libfftw3.a] --with-scalapack=1 --with-scalapack-include=/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/include --with-scalapack-lib=[/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/ScaLAPACK/2.0.2-gompi-2018b-OpenBLAS-0.3.1/lib/libscalapack.a,libopenblas.a,libgfortran.a] --with-blas-lapack-lib=[/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/OpenBLAS/0.3.1-GCC-7.3.0-2.30/lib/libopenblas.a,libgfortran.a] --with-flex=1 --with-flex-dir=/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/flex/2.6.4-GCCcore-7.3.0 --with-bison=1 --with-bison-dir=/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/Bison/3.0.5-GCCcore-7.3.0 --with-python=1 --with-python-dir=/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/Python/2.7.15-foss-2018b --with-hdf5=1 --with-hdf5-dir=/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/HDF5/1.10.2-foss-2018b --with-valgrind=1 --with-valgrind-dir=/rds/bear-apps/devel/eb-sjb-up/EL7/EL7-cascadelake/software/Valgrind/3.14.0-foss-2018b
The important parts of that are: --with-flex=1, --with-bison=1, and --with-python=1. I.e. all the build deps are sent through to PETSc.
That is because the self.cfg.builddependencies()
depfilter is:
[{'full_mod_name': 'CMake/3.12.1-GCCcore-7.3.0', 'short_mod_name': 'CMake/3.12.1-GCCcore-7.3.0', 'name': 'CMake', 'version': '3.12.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '7.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'flex/2.6.4-GCCcore-7.3.0', 'short_mod_name': 'flex/2.6.4-GCCcore-7.3.0', 'name': 'flex', 'version': '2.6.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '7.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Bison/3.0.5-GCCcore-7.3.0', 'short_mod_name': 'Bison/3.0.5-GCCcore-7.3.0', 'name': 'Bison', 'version': '3.0.5', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '7.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/2.7.15-foss-2018b', 'short_mod_name': 'Python/2.7.15-foss-2018b', 'name': 'Python', 'version': '2.7.15', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2018b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, 'BLACS', 'BLAS', 'CMake', 'FFTW', 'LAPACK', 'numpy', 'mpi4py', 'papi', 'ScaLAPACK', 'SciPy-bundle', 'SuiteSparse']
This was referenced Jan 4, 2021
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Test report by @boegel Overview of tested easyconfigs (in order)
Build succeeded for 3 out of 3 (3 easyconfigs in total) |
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Test report by @branfosj Overview of tested easyconfigs (in order)
Build succeeded for 7 out of 7 (7 easyconfigs in total) |
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Going in, thanks @boegel! |
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cfr. discussion in easybuilders/easybuild-easyconfigs#11947