[GCCcore/9.3.0] groff requires makeinfo as a build dep, which requires Perl, which requires groff; break cyclic dependency by adding Perl-minimal and makeinfo-minimal

[akesandgren]

(created using eb --new-pr)

Depends on easybuilders/easybuild-easyblocks#2474

Solves #12067

[boegelbot]

@akesandgren: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/939299803
Output from first failing test suite run:

FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 607, in test_dep_versions_per_toolchain_generation
    self.assertFalse(multi_dep_vars, error_msg)
AssertionError: No multi-variant deps found for '^.*-(?P<tc_gen>GCCcore-[7-9]\.[0-9]).*\.eb$' easyconfigs:

found 2 variants of 'Perl' dependency in easyconfigs using 'GCCcore-9.3' toolchain generation
* version: 5.30.2; versionsuffix:  as dep for set(['any2fasta-0.4.2-GCCcore-9.3.0.eb', 'Circos-0.69-9-GCCcore-9.3.0.eb', 'BioPerl-1.7.7-GCCcore-9.3.0.eb', 'XML-LibXML-2.0205-GCCcore-9.3.0.eb', 'MCL-14.137-GCCcore-9.3.0.eb', 'snpEff-5.0-GCCcore-9.3.0-Java-13-Python-3.8.2.eb', 'Trim_Galore-0.6.6-GCCcore-9.3.0-Python-3.8.2.eb', 'ExifTool-12.00-GCCcore-9.3.0.eb', 'git-2.23.0-GCCcore-9.3.0-nodocs.eb', 'intltool-0.51.0-GCCcore-9.3.0.eb', 'GD-2.71-GCCcore-9.3.0.eb', 'Graphviz-2.44.1-GCCcore-9.3.0-Java-11-Python-3.8.2.eb', 'DFA-0.3.4-GCCcore-9.3.0-Python-3.8.2.eb', 'samclip-0.4.0-GCCcore-9.3.0.eb', 'Graphviz-2.44.1-GCCcore-9.3.0-Java-11.eb', 'parallel-20200522-GCCcore-9.3.0.eb', 'wtdbg2-2.5-GCCcore-9.3.0.eb', 'pydot-1.4.1-GCCcore-9.3.0.eb', 'festival-2.5.0-GCCcore-9.3.0.eb', 'speech_tools-2.5.0-GCCcore-9.3.0.eb', 'canu-2.1.1-GCCcore-9.3.0-Java-11.eb', 'parallel-20200422-GCCcore-9.3.0.eb', 'ITSx-1.1.2-GCCcore-9.3.0.eb', 'Kraken-1.1.1-GCCcore-9.3.0.eb', 'fetchMG-1.0-GCCcore-9.3.0.eb', 'py-aiger-6.1.1-GCCcore-9.3.0-Python-3.8.2.eb', 'DB_File-1.835-GCCcore-9.3.0.eb', 'ProbABEL-0.5.0-GCCcore-9.3.0.eb', 'GitPython-3.1.9-GCCcore-9.3.0-Python-3.8.2.eb'])
* version: 5.30.2; versionsuffix: -minimal as dep for set(['makeinfo-6.7-GCCcore-9.3.0-minimal.eb'])


----------------------------------------------------------------------
Ran 12411 tests in 465.900s

FAILED (failures=1)
ERROR: Not all tests were successful.

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[akesandgren]

Test report by @akesandgren
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#2474
SUCCESS
Build succeeded for 9 out of 9 (9 easyconfigs in total)
b-an02.hpc2n.umu.se - Linux Ubuntu 20.04, x86_64, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 3.8.5
See https://gist.github.com/c64c2a0abc396964484e0f3571594638 for a full test report.

[SebastianAchilles]

Test report by @SebastianAchilles
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#2474
SUCCESS
Build succeeded for 9 out of 9 (9 easyconfigs in total)
rocky8-eb - Linux rocky linux 8.4, x86_64, Intel(R) Core(TM) i7-6900K CPU @ 3.20GHz (broadwell), Python 3.6.8
See https://gist.github.com/47f53a673229be968c1075cf02a21396 for a full test report.

[SebastianAchilles]

Test report by @SebastianAchilles
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#2474
SUCCESS
Build succeeded for 9 out of 9 (9 easyconfigs in total)
centos8-eb - Linux centos linux 8.3.2011, x86_64, Intel(R) Core(TM) i7-8700 CPU @ 3.20GHz (skylake), Python 3.6.8
See https://gist.github.com/dc5f6a45de21ea7b4eae4ca04c464392 for a full test report.

[SebastianAchilles]

@akesandgren to fix the failing test an exception should be added for Perl with versionsuffix -minimal in test/easyconfigs/easyconfigs.py

[akesandgren]

Yeah, but I don't know how to write that exception, since it (currently) should only be allowed in makeinfo-minimal.
Trying to figure out the code snippets there...

[SebastianAchilles]

@akesandgren Thanks for adding the exception!
lgtm

[SebastianAchilles]

Going in, thanks @akesandgren!

[SebastianAchilles]

@boegelbot please test @ generoso

[boegelbot]

@SebastianAchilles: Request for testing this PR well received on generoso

PR test command 'EB_PR=13163 EB_ARGS= /apps/slurm/default/bin/sbatch --job-name test_PR_13163 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 17606

Test results coming soon (I hope)...

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[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
generoso-x-2 - Linux centos linux 8.2.2004, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/a4367a55179197a39ffb88be7436a7df for a full test report.