espressomd · KaiSzuttor · Sep 10, 2018 · Sep 8, 2018 · Sep 8, 2018
diff --git a/AUTHORS b/AUTHORS
diff --git a/COPYING b/COPYING
diff --git a/ChangeLog b/ChangeLog
diff --git a/INSTALL b/INSTALL
diff --git a/NEWS b/NEWS
diff --git a/README b/README
diff --git a/config/gen_sampleconfig.py b/config/gen_sampleconfig.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python
 # Copyright (C) 2013,2014 The ESPResSo project
 # Copyright (C) 2012 Olaf Lenz
 #

diff --git a/config/header.txt b/config/header.txt
diff --git a/config/myconfig-sample-header.hpp.in b/config/myconfig-sample-header.hpp.in
diff --git a/doc/doxygen/Doxyfile b/doc/doxygen/Doxyfile
diff --git a/doc/doxygen/figs/bond_angle.fig b/doc/doxygen/figs/bond_angle.fig
diff --git a/doc/doxygen/figs/bond_angle.gif b/doc/doxygen/figs/bond_angle.gif
diff --git a/doc/doxygen/figs/datastorage.gif b/doc/doxygen/figs/datastorage.gif
diff --git a/doc/doxygen/figs/dihedral_angle.fig b/doc/doxygen/figs/dihedral_angle.fig
diff --git a/doc/doxygen/figs/dihedral_angle.gif b/doc/doxygen/figs/dihedral_angle.gif
diff --git a/doc/doxygen/figs/dihedral_angle.pdf b/doc/doxygen/figs/dihedral_angle.pdf
diff --git a/doc/doxygen/figs/directions.fig b/doc/doxygen/figs/directions.fig
diff --git a/doc/doxygen/figs/directions.gif b/doc/doxygen/figs/directions.gif
diff --git a/doc/doxygen/figs/elc_errordist.gif b/doc/doxygen/figs/elc_errordist.gif
diff --git a/doc/doxygen/figs/ghost_cells.fig b/doc/doxygen/figs/ghost_cells.fig
diff --git a/doc/doxygen/figs/ghost_cells.gif b/doc/doxygen/figs/ghost_cells.gif
diff --git a/doc/doxygen/figs/ghost_communication.fig b/doc/doxygen/figs/ghost_communication.fig
diff --git a/doc/doxygen/figs/ghost_communication.gif b/doc/doxygen/figs/ghost_communication.gif
diff --git a/doc/doxygen/figs/linked_cells.fig b/doc/doxygen/figs/linked_cells.fig
diff --git a/doc/doxygen/figs/linked_cells.gif b/doc/doxygen/figs/linked_cells.gif
diff --git a/doc/doxygen/figs/logo.png b/doc/doxygen/figs/logo.png
diff --git a/doc/doxygen/figs/move_to_p_buf.fig b/doc/doxygen/figs/move_to_p_buf.fig
diff --git a/doc/doxygen/figs/move_to_p_buf.gif b/doc/doxygen/figs/move_to_p_buf.gif
diff --git a/doc/doxygen/figs/particles.fig b/doc/doxygen/figs/particles.fig
diff --git a/doc/doxygen/figs/particles.gif b/doc/doxygen/figs/particles.gif
diff --git a/doc/doxygen/gen_doxyconfig.py b/doc/doxygen/gen_doxyconfig.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python
 # Copyright (C) 2013-2018 The ESPResSo project
 # Copyright (C) 2012 Olaf Lenz
 #

diff --git a/doc/doxygen/main.dox b/doc/doxygen/main.dox
diff --git a/doc/logo/cup-nosteam.png b/doc/logo/cup-nosteam.png
diff --git a/doc/logo/cup.png b/doc/logo/cup.png
diff --git a/doc/logo/cup.vmd b/doc/logo/cup.vmd
diff --git a/doc/logo/cup_espresso.vtf b/doc/logo/cup_espresso.vtf
diff --git a/doc/logo/favicon.ico b/doc/logo/favicon.ico
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diff --git a/doc/logo/logo-animated-500.gif b/doc/logo/logo-animated-500.gif
diff --git a/doc/logo/logo-small.pdf b/doc/logo/logo-small.pdf
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diff --git a/doc/logo/logo-template.svg b/doc/logo/logo-template.svg
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diff --git a/doc/misc/bibliography.bib b/doc/misc/bibliography.bib
diff --git a/doc/misc/covers/covers.bib b/doc/misc/covers/covers.bib
diff --git a/doc/misc/covers/kosovan10a-cover.pdf b/doc/misc/covers/kosovan10a-cover.pdf
diff --git a/doc/misc/covers/mann11a-cover.pdf b/doc/misc/covers/mann11a-cover.pdf
diff --git a/doc/misc/covers/reynwar07a-cover.jpg b/doc/misc/covers/reynwar07a-cover.jpg
diff --git a/doc/misc/description.txt b/doc/misc/description.txt
diff --git a/doc/misc/homepage/background.png b/doc/misc/homepage/background.png
diff --git a/doc/misc/homepage/background.xcf b/doc/misc/homepage/background.xcf
diff --git a/doc/misc/homepage/favicon.ico b/doc/misc/homepage/favicon.ico
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diff --git a/doc/misc/homepage/header.png b/doc/misc/homepage/header.png
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diff --git a/doc/misc/python.tex b/doc/misc/python.tex
diff --git a/doc/sphinx/figures/arealocal.png b/doc/sphinx/figures/arealocal.png
diff --git a/doc/sphinx/figures/bending.png b/doc/sphinx/figures/bending.png
diff --git a/doc/sphinx/figures/correlator_scheme.fig b/doc/sphinx/figures/correlator_scheme.fig
diff --git a/doc/sphinx/figures/correlator_scheme.pdf b/doc/sphinx/figures/correlator_scheme.pdf
diff --git a/doc/sphinx/figures/diamond.png b/doc/sphinx/figures/diamond.png
diff --git a/doc/sphinx/figures/dihedral-angle.fig b/doc/sphinx/figures/dihedral-angle.fig
diff --git a/doc/sphinx/figures/dihedral-angle.pdf b/doc/sphinx/figures/dihedral-angle.pdf
diff --git a/doc/sphinx/figures/elc-errordist.pdf b/doc/sphinx/figures/elc-errordist.pdf
diff --git a/doc/sphinx/figures/fullerene.png b/doc/sphinx/figures/fullerene.png
diff --git a/doc/sphinx/figures/hbond.fig b/doc/sphinx/figures/hbond.fig
diff --git a/doc/sphinx/figures/hbond.pdf b/doc/sphinx/figures/hbond.pdf
diff --git a/doc/sphinx/figures/maggs-charge-assignment.pdf b/doc/sphinx/figures/maggs-charge-assignment.pdf
diff --git a/doc/sphinx/figures/maggs-initial-scheme.pdf b/doc/sphinx/figures/maggs-initial-scheme.pdf
diff --git a/doc/sphinx/figures/maggs-rotation.pdf b/doc/sphinx/figures/maggs-rotation.pdf
diff --git a/doc/sphinx/figures/nacl-rdf.pdf b/doc/sphinx/figures/nacl-rdf.pdf
diff --git a/doc/sphinx/figures/oif.png b/doc/sphinx/figures/oif.png
diff --git a/doc/sphinx/figures/oif1.png b/doc/sphinx/figures/oif1.png
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diff --git a/doc/sphinx/figures/oif3.png b/doc/sphinx/figures/oif3.png
diff --git a/doc/sphinx/figures/oifchannel.png b/doc/sphinx/figures/oifchannel.png
diff --git a/doc/sphinx/figures/oifcolored-triangles.png b/doc/sphinx/figures/oifcolored-triangles.png
diff --git a/doc/sphinx/figures/oifcylinder.png b/doc/sphinx/figures/oifcylinder.png
diff --git a/doc/sphinx/figures/oifrhomboid.png b/doc/sphinx/figures/oifrhomboid.png
diff --git a/doc/sphinx/figures/oifstretched-sphere.png b/doc/sphinx/figures/oifstretched-sphere.png
diff --git a/doc/sphinx/figures/salt.png b/doc/sphinx/figures/salt.png
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diff --git a/doc/sphinx/zrefs.bib b/doc/sphinx/zrefs.bib
diff --git a/doc/tutorials/02-charged_system/scripts/nacl.py b/doc/tutorials/02-charged_system/scripts/nacl.py
diff --git a/doc/tutorials/02-charged_system/scripts/nacl_units.py b/doc/tutorials/02-charged_system/scripts/nacl_units.py
diff --git a/doc/tutorials/02-charged_system/scripts/nacl_units_confined.py b/doc/tutorials/02-charged_system/scripts/nacl_units_confined.py
diff --git a/doc/tutorials/02-charged_system/scripts/nacl_units_confined_vis.py b/doc/tutorials/02-charged_system/scripts/nacl_units_confined_vis.py
diff --git a/doc/tutorials/02-charged_system/scripts/nacl_units_vis.py b/doc/tutorials/02-charged_system/scripts/nacl_units_vis.py
diff --git a/doc/tutorials/common/common.tex b/doc/tutorials/common/common.tex
diff --git a/samples/lj_liquid_distribution.py b/samples/lj_liquid_distribution.py
diff --git a/samples/lj_liquid_structurefactor.py b/samples/lj_liquid_structurefactor.py
diff --git a/src/featuredefs.py b/src/featuredefs.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python
 # Copyright (C) 2013-2018 The ESPResSo project
 # Copyright (C) 2012 Olaf Lenz
 #

diff --git a/src/features.def b/src/features.def
diff --git a/src/python/espressomd/_espresso.pxd b/src/python/espressomd/_espresso.pxd
diff --git a/src/python/espressomd/_init.pyx b/src/python/espressomd/_init.pyx
diff --git a/src/python/espressomd/c_analyze.pxd b/src/python/espressomd/c_analyze.pxd
diff --git a/src/python/espressomd/cuda_init.pyx b/src/python/espressomd/cuda_init.pyx
diff --git a/src/python/espressomd/highlander.py b/src/python/espressomd/highlander.py
diff --git a/src/python/espressomd/system.pyx b/src/python/espressomd/system.pyx
diff --git a/src/python/espressomd/thermostat.pyx b/src/python/espressomd/thermostat.pyx
diff --git a/src/python/espressomd/visualization_opengl.pyx b/src/python/espressomd/visualization_opengl.pyx
diff --git a/testsuite/data/coulomb_cloud_wall_system.data b/testsuite/data/coulomb_cloud_wall_system.data
diff --git a/testsuite/data/coulomb_mixed_periodicity_system.data b/testsuite/data/coulomb_mixed_periodicity_system.data
diff --git a/testsuite/data/npt_lj_system.data b/testsuite/data/npt_lj_system.data
diff --git a/testsuite/data/p3m_magnetostatics_expected.data b/testsuite/data/p3m_magnetostatics_expected.data
diff --git a/testsuite/data/p3m_magnetostatics_system.data b/testsuite/data/p3m_magnetostatics_system.data
diff --git a/testsuite/data/sphere393nodes.dat b/testsuite/data/sphere393nodes.dat
diff --git a/testsuite/data/sphere393triangles.dat b/testsuite/data/sphere393triangles.dat
diff --git a/testsuite/virtual_sites_relative.py b/testsuite/virtual_sites_relative.py