Data races when adding and removing nodes(Area2D, RigidBody2D) with physics multi threading

[qarmin]

Godot version:
3.3.rc.custom_build. 7696f88

OS/device including version:
Ubuntu 20.04 CI

Issue description:
This errors are shown when adding, moving and removing nodes in project(thread sanitizer output)

2021-03-30T07:54:15.3490375Z WARNING: ThreadSanitizer: data race (pid=12978)
2021-03-30T07:54:15.3491718Z   Read of size 8 at 0x7b5400f924c8 by main thread (mutexes: write M653157477961114776, write M646683553496772888, write M148472844719324248, write M141998920254982360, write M406022448409990488, write M399548523945648600, write M393919024409996760, write M998527274383313368, write M100059148723385496, write M106533073187727384, write M760399444086866712, write M766873368551208600, write M387445099945654872):
2021-03-30T07:54:15.3493214Z     #0 memcpy <null> (godot.x11.tools.64.llvms+0x15adf57)
2021-03-30T07:54:15.3494924Z     #1 Body2DSW::get_linear_velocity() const /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/body_2d_sw.h:192:62 (godot.x11.tools.64.llvms+0x66426bb)
2021-03-30T07:54:15.3497789Z     #2 Physics2DDirectBodyStateSW::get_linear_velocity() const /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/body_2d_sw.h:361:61 (godot.x11.tools.64.llvms+0x6972b09)
2021-03-30T07:54:15.3500411Z     #3 RigidBody2D::_direct_state_changed(Object*) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/scene/2d/physics_body_2d.cpp:453:27 (godot.x11.tools.64.llvms+0x5ac2d4d)
2021-03-30T07:54:15.3510695Z     #4 MethodBind1<Object*>::call(Object*, Variant const**, int, Variant::CallError&) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/./core/method_bind.gen.inc:775:3 (godot.x11.tools.64.llvms+0x17cb339)
2021-03-30T07:54:15.3513265Z     #5 Object::call(StringName const&, Variant const**, int, Variant::CallError&) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/core/object.cpp:919:17 (godot.x11.tools.64.llvms+0x6caa6cf)
2021-03-30T07:54:15.3515515Z     #6 Body2DSW::call_queries() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/body_2d_sw.cpp:621:10 (godot.x11.tools.64.llvms+0x696fd13)
2021-03-30T07:54:15.3517643Z     #7 Space2DSW::call_queries() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/space_2d_sw.cpp:1296:6 (godot.x11.tools.64.llvms+0x66abf46)
2021-03-30T07:54:15.3519895Z     #8 Physics2DServerSW::flush_queries() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_sw.cpp:1360:10 (godot.x11.tools.64.llvms+0x663ef0f)
2021-03-30T07:54:15.3522325Z     #9 Physics2DServerWrapMT::flush_queries() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_wrap_mt.cpp:99:21 (godot.x11.tools.64.llvms+0x664d023)
2021-03-30T07:54:15.3524598Z     #10 Main::iteration() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/main/main.cpp:2098:37 (godot.x11.tools.64.llvms+0x16d0117)
2021-03-30T07:54:15.3526670Z     #11 OS_X11::run() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/platform/x11/os_x11.cpp:3641:7 (godot.x11.tools.64.llvms+0x1658906)
2021-03-30T07:54:15.3529740Z     #12 main /home/runner/work/RegressionTestProject/RegressionTestProject/godot/platform/x11/godot_x11.cpp:56:6 (godot.x11.tools.64.llvms+0x163378a)
2021-03-30T07:54:15.3530759Z 
2021-03-30T07:54:15.3531220Z   Previous write of size 8 at 0x7b5400f924c8 by thread T15:
2021-03-30T07:54:15.3532002Z     #0 memcpy <null> (godot.x11.tools.64.llvms+0x15adf57)
2021-03-30T07:54:15.3533716Z     #1 Body2DSW::set_state(Physics2DServer::BodyState, Variant const&) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/body_2d_sw.cpp:328:21 (godot.x11.tools.64.llvms+0x696e311)
2021-03-30T07:54:15.3536685Z     #2 Physics2DServerSW::body_set_state(RID, Physics2DServer::BodyState, Variant const&) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_sw.cpp:836:8 (godot.x11.tools.64.llvms+0x663a750)
2021-03-30T07:54:15.3540035Z     #3 CommandQueueMT::Command3<Physics2DServer, void (Physics2DServer::*)(RID, Physics2DServer::BodyState, Variant const&), RID, Physics2DServer::BodyState, Variant>::call() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/./core/command_queue_mt.h:301:2 (godot.x11.tools.64.llvms+0x667e8cf)
2021-03-30T07:54:15.3543072Z     #4 CommandQueueMT::flush_one(bool) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/./core/command_queue_mt.h:440:8 (godot.x11.tools.64.llvms+0x665e040)
2021-03-30T07:54:15.3545511Z     #5 CommandQueueMT::wait_and_flush_one() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/./core/command_queue_mt.h:473:3 (godot.x11.tools.64.llvms+0x664e08c)
2021-03-30T07:54:15.3547849Z     #6 Physics2DServerWrapMT::thread_loop() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_wrap_mt.cpp:63:17 (godot.x11.tools.64.llvms+0x664cc4f)
2021-03-30T07:54:15.3551632Z     #7 Physics2DServerWrapMT::_thread_callback(void*) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_wrap_mt.cpp:50:8 (godot.x11.tools.64.llvms+0x664cb10)
2021-03-30T07:54:15.3590557Z     #8 Thread::callback(Thread*, Thread::Settings const&, void (*)(void*), void*) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/core/os/thread.cpp:75:2 (godot.x11.tools.64.llvms+0x6ef9db2)
2021-03-30T07:54:15.3599110Z     #9 void std::__invoke_impl<void, void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*>(std::__invoke_other, void (*&&)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*&&, Thread::Settings&&, void (*&&)(void*), void*&&) /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/bits/invoke.h:60:14 (godot.x11.tools.64.llvms+0x6efb9c3)
2021-03-30T07:54:15.3606348Z     #10 std::__invoke_result<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*>::type std::__invoke<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*>(void (*&&)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*&&, Thread::Settings&&, void (*&&)(void*), void*&&) /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/bits/invoke.h:95:14 (godot.x11.tools.64.llvms+0x6efb6b7)
2021-03-30T07:54:15.3650458Z     #11 void std::thread::_Invoker<std::tuple<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*> >::_M_invoke<0ul, 1ul, 2ul, 3ul, 4ul>(std::_Index_tuple<0ul, 1ul, 2ul, 3ul, 4ul>) /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/thread:264:13 (godot.x11.tools.64.llvms+0x6efb5e3)
2021-03-30T07:54:15.3653468Z     #12 std::thread::_Invoker<std::tuple<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*> >::operator()() /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/thread:271:11 (godot.x11.tools.64.llvms+0x6efb518)
2021-03-30T07:54:15.3656226Z     #13 std::thread::_State_impl<std::thread::_Invoker<std::tuple<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*> > >::_M_run() /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/thread:215:13 (godot.x11.tools.64.llvms+0x6efaebf)
2021-03-30T07:54:15.3657938Z     #14 execute_native_thread_routine <null> (godot.x11.tools.64.llvms+0x765acc3)
2021-03-30T07:54:15.3658564Z 
2021-03-30T07:54:15.3659083Z   Location is heap block of size 536 at 0x7b5400f92400 allocated by thread T15:
2021-03-30T07:54:15.3659930Z     #0 malloc <null> (godot.x11.tools.64.llvms+0x15a2894)
2021-03-30T07:54:15.3661470Z     #1 Memory::alloc_static(unsigned long, bool) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/core/os/memory.cpp:82:14 (godot.x11.tools.64.llvms+0x6eef0ff)
2021-03-30T07:54:15.3663634Z     #2 operator new(unsigned long, char const*) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/core/os/memory.cpp:42:9 (godot.x11.tools.64.llvms+0x6eef056)
2021-03-30T07:54:15.3665882Z     #3 Physics2DServerSW::body_create() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_sw.cpp:582:19 (godot.x11.tools.64.llvms+0x66384f8)
2021-03-30T07:54:15.3668458Z     #4 Physics2DServerWrapMT::bodyallocn() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_wrap_mt.h:179:2 (godot.x11.tools.64.llvms+0x66763f5)
2021-03-30T07:54:15.3671192Z     #5 CommandQueueMT::CommandRet0<Physics2DServerWrapMT, int (Physics2DServerWrapMT::*)(), int>::call() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/./core/command_queue_mt.h:304:2 (godot.x11.tools.64.llvms+0x665ef78)
2021-03-30T07:54:15.3673837Z     #6 CommandQueueMT::flush_one(bool) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/./core/command_queue_mt.h:440:8 (godot.x11.tools.64.llvms+0x665e040)
2021-03-30T07:54:15.3676006Z     #7 CommandQueueMT::wait_and_flush_one() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/./core/command_queue_mt.h:473:3 (godot.x11.tools.64.llvms+0x664e08c)
2021-03-30T07:54:15.3678337Z     #8 Physics2DServerWrapMT::thread_loop() /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_wrap_mt.cpp:63:17 (godot.x11.tools.64.llvms+0x664cc4f)
2021-03-30T07:54:15.3680850Z     #9 Physics2DServerWrapMT::_thread_callback(void*) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/servers/physics_2d/physics_2d_server_wrap_mt.cpp:50:8 (godot.x11.tools.64.llvms+0x664cb10)
2021-03-30T07:54:15.3683303Z     #10 Thread::callback(Thread*, Thread::Settings const&, void (*)(void*), void*) /home/runner/work/RegressionTestProject/RegressionTestProject/godot/core/os/thread.cpp:75:2 (godot.x11.tools.64.llvms+0x6ef9db2)
2021-03-30T07:54:15.3686598Z     #11 void std::__invoke_impl<void, void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*>(std::__invoke_other, void (*&&)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*&&, Thread::Settings&&, void (*&&)(void*), void*&&) /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/bits/invoke.h:60:14 (godot.x11.tools.64.llvms+0x6efb9c3)
2021-03-30T07:54:15.3690932Z     #12 std::__invoke_result<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*>::type std::__invoke<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*>(void (*&&)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*&&, Thread::Settings&&, void (*&&)(void*), void*&&) /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/bits/invoke.h:95:14 (godot.x11.tools.64.llvms+0x6efb6b7)
2021-03-30T07:54:15.3694874Z     #13 void std::thread::_Invoker<std::tuple<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*> >::_M_invoke<0ul, 1ul, 2ul, 3ul, 4ul>(std::_Index_tuple<0ul, 1ul, 2ul, 3ul, 4ul>) /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/thread:264:13 (godot.x11.tools.64.llvms+0x6efb5e3)
2021-03-30T07:54:15.3697890Z     #14 std::thread::_Invoker<std::tuple<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*> >::operator()() /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/thread:271:11 (godot.x11.tools.64.llvms+0x6efb518)
2021-03-30T07:54:15.3700832Z     #15 std::thread::_State_impl<std::thread::_Invoker<std::tuple<void (*)(Thread*, Thread::Settings const&, void (*)(void*), void*), Thread*, Thread::Settings, void (*)(void*), void*> > >::_M_run() /usr/bin/../lib/gcc/x86_64-linux-gnu/10/../../../../include/c++/10/thread:215:13 (godot.x11.tools.64.llvms+0x6efaebf)
2021-03-30T07:54:15.3702650Z     #16 execute_native_thread_routine <null> (godot.x11.tools.64.llvms+0x765acc3)

CI - https://github.com/qarmin/RegressionTestProject/runs/2225466443?check_suite_focus=true
Steps to reproduce:

1. Enable multithread physics in project settings
2. Run project

Minimal reproduction project:

extends Node

var TIME_TO_DELETE : float = 1.0
var time_to_delete : float = TIME_TO_DELETE
	
var disabled_classes : Array = []
	
func _populate() -> void:
	for _i in range(2): # Number of created 
		for name_of_class in ClassDB.get_class_list():
			if name_of_class in disabled_classes:
				continue
			if !ClassDB.can_instance(name_of_class):
				continue
			add_child(ClassDB.instance(name_of_class))
				
				
# Populate at start
func _ready() -> void: 
	_populate()

# Move nodes a little and delete and readd them later
func _process(delta: float) -> void:
	for i in get_children():
		if i is Control:
			i._set_size(Vector2(200 * randf() - 100, 200 * randf() - 100))
		if i is Node2D:
			i.set_position(Vector2(1000 * randf() - 500, 1000 * randf() - 500))
		if i is Spatial:
			if i.get_name() != "Camera":
				i.set_scale(Vector3(delta + 1, delta + 1, delta + 1))
				i.set_translation(Vector3(10 * randf(), 10 * randf(), 10 * randf()))
			
	time_to_delete -= delta
	if time_to_delete < 0:
		time_to_delete += TIME_TO_DELETE
		
		for i in get_children():
			i.queue_free()
			
		_populate()