-
Notifications
You must be signed in to change notification settings - Fork 7
Authors
#0-i. Authors
- Malachi Griffith1,2,4, mgriffit[AT]genome.wustl.edu, @malachigriffith
- Obi Griffith1,3,4, ogriffit[AT]genome.wustl.edu, @obigriffith
- Jason Walker1, jwalker[AT]genome.wustl.edu
- Ben Ainscough1, bainscou[AT]genome.wustl.edu
- Nicholas Spies1, nspies[AT]genome.wustl.edu
1 The Genome Institute, Washington University School of Medicine
2 The Department of Genetics, Washington University School of Medicine
3 The Department of Medicine, Washington University School of Medicine
4 The Siteman Cancer Center, a National Cancer Institute Comprehensive Cancer Center, Barnes Jewish Hospital and Washington University School of Medicine
We are grateful to the following people for past and ongoing contributions to this work:
- Francis Ouellette (Ontario Institute for Cancer Research)
- Michelle Brazas (Ontario Institute for Cancer Research)
- Fouad Yousif (Ontario Institute for Cancer Research)
- Zhibin Lu (Ontario Institute for Cancer Research)
- Rodrigo Goya (British Columbia Cancer Agency)
- Vincent Magrini (McDonnell Genome Institute, Washington University School of Medicine)
- Sean McGrath (McDonnell Genome Institute, Washington University School of Medicine)
- Zachary Skidmore (McDonnell Genome Institute, Washington University School of Medicine)
- Richard K Wilson (McDonnell Genome Institute, Washington University School of Medicine)
- Elaine R Mardis (McDonnell Genome Institute, Washington University School of Medicine)
- All of the students that have taken our RNA-seq courses through CBW or CSHL
| Previous Section | This Section | Next Section | |:-----------------------:|:---------------------------:|:-----------------------:| | | Authors | Citation |
##Note: The current version of this tutorial is now at www.rnaseq.wiki
Table of Contents
Module 0: Authors | Citation | Syntax | Intro to AWS | Log into AWS | Unix | Environment | Resources
Module 1: Installation | Reference Genomes | Annotations | Indexing | Data | Data QC
Module 2: Adapter Trim | Alignment | IGV | Alignment Visualization | Alignment QC
Module 3: Expression | Differential Expression | DE Visualization
Module 4: Ref Guided | De novo | Merging | Differential Splicing | Splicing Visualization
Module 5: Kallisto
Appendix: Abbreviations | Lectures | Practical Exercise Solutions | Integrated Assignment | Proposed Improvements | AWS Setup