fix: reuse pre-commit hook and python 3.9+ compatiblity

.gitattributes

@@ -1,2 +1,7 @@
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
 # GitHub syntax highlighting
 pixi.lock linguist-language=YAML linguist-generated=true

.github/dependabot.yml

@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
 version: 2
 
 updates:

.github/workflows/build.yml

@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
 name: build
 
 on:

.github/workflows/codeql.yml

@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
 # For most projects, this workflow file will not need changing; you simply need
 # to commit it to your repository.
 #

.github/workflows/coverage.yml

@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
 name: Post coverage comment
 
 on:

.github/workflows/documentation-links.yml

@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
 name: readthedocs preview
 on:
   pull_request_target:

.github/workflows/pre-commit.yml

@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
 name: pre-commit
 
 on:
@@ -13,5 +18,5 @@ jobs:
     - uses: actions/checkout@v4
     - uses: actions/setup-python@v5
       with:
-        python-version: "3.12"
+        python-version: "3.9"
     - uses: pre-commit/[email protected]

.github/workflows/publish-pypi.yml

@@ -1,3 +1,8 @@
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
 # From https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-pypi
 
 name: Upload Python Package
@@ -18,7 +23,7 @@ jobs:
 
       - uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
+          python-version: "3.9"
 
       - name: Build release distributions
         run: |

.gitignore

@@ -1,4 +1,5 @@
-# SPDX-FileCopyrightText: Copyright © 2022 Idiap Research Institute <[email protected]>
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
 #
 # SPDX-License-Identifier: GPL-3.0-or-later
 

.pre-commit-config.yaml

@@ -1,4 +1,5 @@
-# SPDX-FileCopyrightText: Copyright © 2023 Idiap Research Institute <[email protected]>
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
 # SPDX-FileContributor: Andre Anjos <[email protected]>
 #
 # SPDX-License-Identifier: GPL-3.0-or-later
@@ -46,8 +47,3 @@ repos:
     rev: v3.0.2
     hooks:
       - id: reuse
-        exclude: |
-          (?x)(
-              ^.pixi/|
-              ^.pixi.lock|
-              )

.readthedocs.yaml

@@ -1,4 +1,5 @@
-# SPDX-FileCopyrightText: Copyright © 2023 Idiap Research Institute <[email protected]>
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
 #
 # SPDX-License-Identifier: GPL-3.0-or-later
 
@@ -7,7 +8,7 @@ version: 2
 build:
   os: "ubuntu-22.04"
   tools:
-    python: "3.12"
+    python: "3.9"
 
 python:
   install:

README.md

@@ -1,10 +1,11 @@
 <!--
-SPDX-FileCopyrightText: Copyright © 2022 Idiap Research Institute <[email protected]>
+SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+SPDX-FileContributor: Amir Mohammadi  <[email protected]>
 
 SPDX-License-Identifier: GPL-3.0-or-later
 -->
 
-[![latest-docs](https://img.shields.io/badge/docs-latest-orange.svg)](https://gridtk.readthedocs.io/en/latest/)
+[![docs](https://img.shields.io/badge/docs-stable-orange.svg)](https://gridtk.readthedocs.io/en/stable/)
 [![build](https://github.com/idiap/gridtk/actions/workflows/build.yml/badge.svg)](https://github.com/idiap/gridtk/actions/workflows/build.yml)
 [![coverage](https://raw.githubusercontent.com/idiap/gridtk/python-coverage-comment-action-data/badge.svg)](https://htmlpreview.github.io/?https://github.com/idiap/gridtk/blob/python-coverage-comment-action-data/htmlcov/index.html)
 [![repository](https://img.shields.io/badge/github-project-0000c0.svg)](https://github.com/idiap/gridtk)
@@ -25,22 +26,20 @@ installation, submission, monitoring, and various commands provided by GridTK.
 Before diving into GridTK, ensure you have the following prerequisites:
 
 1. A working SLURM setup.
-2. [Pixi](https://pixi.sh) installed.
+2. [pipx](https://pipx.pypa.io/stable/) installed.
 3. GridTK installed (instructions provided below).
 
 ## Installation
 
 To install GridTK, open your terminal and run the following command:
 
 ```bash
-$ pixi global install pipx
-$ pixi global install python=3.12
-$ pipx install --force --python python3.12 'git+https://github.com/idiap/gridtk.git'
+$ pipx install gridtk
 ```
 It is **not recommennded** to install GridTK using `pip install gridtk` in the
 same environment as your expeirments. GirdTK does not need to be installed in
 the same environment as your experiments and its depencencies may conflict with
-your experiments.
+your experiments' dependencies.
 
 ## Basic Usage
 

doc/conf.py

@@ -1,4 +1,5 @@
-# SPDX-FileCopyrightText: Copyright © 2022 Idiap Research Institute <[email protected]>
+# SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+# SPDX-FileContributor: Amir Mohammadi  <[email protected]>
 #
 # SPDX-License-Identifier: GPL-3.0-or-later
 

doc/index.rst

@@ -1,4 +1,5 @@
-.. SPDX-FileCopyrightText: Copyright © 2022 Idiap Research Institute <[email protected]>
+.. SPDX-FileCopyrightText: 2024 Idiap Research Institute <[email protected]>
+.. SPDX-FileContributor: Amir Mohammadi  <[email protected]>
 ..
 .. SPDX-License-Identifier: GPL-3.0-or-later