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update rmpt01_test #46

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merged 5 commits into from
May 17, 2023
Merged

update rmpt01_test #46

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e2e91f2
closes # 45
sob2021 May 17, 2023
a588e74
update to rmpt03, same as tlg-catalog
sob2021 May 17, 2023
3d4fb89
update to rmpt04, same as tlg-catalog
sob2021 May 17, 2023
266514e
update to rmpt05, same as tlg-catalog
sob2021 May 17, 2023
b01c1ce
Merge branch 'main' into 45_update_rmpt01_test
shajoezhu May 17, 2023
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8 changes: 4 additions & 4 deletions tests/testthat/test-table_rmpt01.R
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Original file line number Diff line number Diff line change
Expand Up @@ -46,11 +46,11 @@ testthat::test_that("RMPT01 is produced correctly", {
.labels = c(n_patients = "Number of Patients", sum_exposure = "Patient Time*"),
custom_label = "Total Number of Patients and Patient Time"
) %>%
split_rows_by("aval_months_cat", label_pos = "topleft", split_label = "Duration of exposure") %>%
summarize_patients_exposure_in_cols(
var = "AVAL",
analyze_patients_exposure_in_cols(
var = "aval_months_cat",
col_split = FALSE
)
) %>%
append_topleft(c("", "Duration of exposure"))

result <- build_table(lyt, df = anl, alt_counts_df = adsl_f)

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22 changes: 10 additions & 12 deletions tests/testthat/test-table_rmpt03.R
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Expand Up @@ -55,11 +55,11 @@ testthat::test_that("RMPT03 variant 1 is produced correctly", {
.labels = c(n_patients = "Number of Patients", sum_exposure = "Patient Time*"),
custom_label = "Total Number of Patients and Patient Time"
) %>%
split_rows_by("AGEGR1", label_pos = "topleft", split_label = "Age group (years)") %>%
summarize_patients_exposure_in_cols(
var = "AVAL",
analyze_patients_exposure_in_cols(
var = "AGEGR1",
col_split = FALSE
)
) %>%
append_topleft(c("", "Age group (years)"))

result <- build_table(lyt, df = anl, alt_counts_df = adsl_f)

Expand All @@ -78,16 +78,14 @@ testthat::test_that("RMPT03 variant 2 is produced correctly", {
.labels = c(n_patients = "Number of Patients", sum_exposure = "Patient Time*"),
custom_label = "Total Number of Patients and Patient Time"
) %>%
split_rows_by("AGEGR2",
split_fun = drop_split_levels, # "< 18" dropped
label_pos = "topleft", split_label = "Age group (years)"
) %>%
summarize_patients_exposure_in_cols(
var = "AVAL",
analyze_patients_exposure_in_cols(
var = "AGEGR2",
col_split = FALSE
)
) %>%
append_topleft(c("", "Age group (years)"))

result <- build_table(lyt, df = anl, alt_counts_df = adsl_f)
result <- build_table(lyt, df = anl, alt_counts_df = adsl_f) %>%
prune_table()

res <- testthat::expect_silent(result)
testthat::expect_snapshot(res)
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8 changes: 4 additions & 4 deletions tests/testthat/test-table_rmpt04.R
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Expand Up @@ -38,11 +38,11 @@ testthat::test_that("RMPT04 variant 1 is produced correctly", {
.labels = c(n_patients = "Number of Patients", sum_exposure = "Patient Time*"),
custom_label = "Total Number of Patients and Patient Time"
) %>%
split_rows_by("ETHNIC", label_pos = "topleft", split_label = "Ethnicity") %>%
summarize_patients_exposure_in_cols(
var = "AVAL",
analyze_patients_exposure_in_cols(
var = "ETHNIC",
col_split = FALSE
)
) %>%
append_topleft(c("", "Ethnicity"))

result <- build_table(lyt, df = anl, alt_counts_df = adsl_f)

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8 changes: 4 additions & 4 deletions tests/testthat/test-table_rmpt05.R
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Original file line number Diff line number Diff line change
Expand Up @@ -37,11 +37,11 @@ testthat::test_that("RMPT05 is produced correctly", {
var = "AVAL", col_split = TRUE,
.labels = c(n_patients = "Patients", sum_exposure = "Person time*")
) %>%
split_rows_by("RACE", label_pos = "topleft", split_label = obj_label(adex$RACE)) %>%
summarize_patients_exposure_in_cols(
var = "AVAL",
analyze_patients_exposure_in_cols(
var = "RACE",
col_split = FALSE
)
) %>%
append_topleft(c("", obj_label(adex$RACE)))

result <- build_table(lyt, df = anl, alt_counts_df = adsl_f)

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