v0.8.3

Enhancements

• Added explicit zero counts to g_km plot "at risk" annotation tables.
• Added a flag for total level split in analyze_patients_exposure_in_cols.
• Implemented .indent_mods argument in functions h_tab_one_biomarker, h_tab_rsp_one_biomarker, h_tab_surv_one_biomarker, summarize_logistic, logistic_summary_by_flag, tabulate_rsp_biomarkers, a_coxreg, summarize_coxreg, tabulate_survival_biomarkers, surv_time, surv_timepoint, and cfun_by_flag.
• Updated summarize_coxreg to print covariates in data rows for univariate Cox regression with no interactions and content rows otherwise.
• Removed "baseline status" text from d_count_abnormal_by_baseline labels.
• Improved default sizing of annotation tables in g_km and added dynamic scaling of the surv_med and coxph annotation tables, with customization via the width_annots argument.

Bug Fixes

• Fixed bug in split_text_grob preventing titles and footnotes from being properly formatted and printed by decorate_grob.
• Fixed bug in g_lineplot preventing lines from being added to the plot when midpoint statistic calculations result in NA value(s).
• Fixed tern:::tidy.glm formals to respect broom:::tidy.default formals.

Miscellaneous

• Remove examples for unexported functions.
• Export functions has_count_in_cols, has_counts_difference, combine_counts, h_tab_rsp_one_biomarker, arrange_grobs, a_count_patients_sum_exposure, a_coxreg, groups_list_to_df, forest_viewport.
• Updated README to include installation instructions for CRAN.
• Began deprecation of indent_mod argument and replace it with the .indent_mods argument in summarize_num_patients and analyze_num_patients.

What's Changed

• Use argument_convention instead of templates by @edelarua in #870
• moving out data generator script from user-facing doc by @Melkiades in #868
• Organization of ignores by @Melkiades in #872
• Remove deprecated footnotes functions by @edelarua in #875
• Fix tibble snapshots by @edelarua in #878
• 858 missing values vignette by @Nolan-Steed in #876
• fixing argument convention and adding section_div to summarize_vars by @Melkiades in #881
• Workflow updates by @walkowif in #877
• Add median_range as a statistic option for summarize_vars by @edelarua in #884
• Refactor cox regression functions to fix table structure by @edelarua in #882
• Fix a_coxreg bug for univariate case with no arm and numeric covariate by @edelarua in #892
• Fix GRAN build errors by @edelarua in #894
• alphabetical order of staged.deps + biomarker-catalog by @Melkiades in #895
• Update token name by @walkowif in #897
• Add Value documentation for all functions by @edelarua in #896
• deprecating pairwise by @Melkiades in #902
• Update level order in d_onco_rsp_label by @edelarua in #904
• Move count_patients_with_flags functions into a separate file by @edelarua in #907
• Check all URLs by @edelarua in #909
• Update overview pages by @edelarua in #908
• Add analyze_patients_exposure_in_cols by @edelarua in #916
• Clean up documentation by @edelarua in #914
• Add more informative error to s_proportion_diff by @edelarua in #922
• Fix na_level bug in summarize_vars by @edelarua in #923
• Check tests after formatters' changes by @Melkiades in #912
• fixing both validation errors by @Melkiades in #927
• Release v0.8.2 [skip vbump] by @edelarua in #921
• Clean up references by @edelarua in #935
• Remove unused imports by @edelarua in #932
• Clean up .Rbuildignore by @edelarua in #933
• Add CRAN installation instructions to README by @edelarua in #937
• Add zero counts to g_km annotation table by @edelarua in #944
• Update workflows by @walkowif in #946
• bug fix for downstream by @Melkiades in #949
• tentative solution for multiple calls of analyze_vars_in_cols by @Melkiades in #938
• Enable .indent_mods argument in all analysis functions by @edelarua in #945
• fix rmpt04 total level in analyze_patients_exposure_in_cols by @Melkiades in #951
• Update NA handling by s_summary by @edelarua in #924
• Fix bug in decorate_grob by @edelarua in #953
• Update summarize_coxreg to work with pagination in all cases by @edelarua in #956
• Remove "baseline status" text from abnormal by baseline labels by @edelarua in #959
• Fix NA value bug in g_lineplot by @edelarua in #963
• add --as-cran to local proj checks by @Melkiades in #964
• fix formals for tern:::tidy.glm by @Melkiades in #969
• Improve annotation scaling in g_km by @edelarua in #961
• CRAN release: update description and news version to 0.8.3, [skip vbump] by @shajoezhu in #970

Full Changelog: v0.8.1...v0.8.3