Skip to content
View jcmcnch's full-sized avatar

Organizations

@fuhrman-lab

Block or report jcmcnch

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Pinned Loading

  1. MGPrimerEval MGPrimerEval Public

    This is a snakemake pipeline that determines primer mismatches to SSU rRNA in metagenomic data.

    Jupyter Notebook 3

  2. eASV-pipeline-for-515Y-926R eASV-pipeline-for-515Y-926R Public

    This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools

    Shell 28 8

  3. simonscmap/c-microbial-map simonscmap/c-microbial-map Public

    Code to plot BLAST hits from Simons Foundation CMAP database with R Oce package

    Python

  4. OTUandMetadata2CMAP OTUandMetadata2CMAP Public

    A python script for converting a traditional OTU/eASV table and associated metadata into a format that can be ingested and queried easily by the Simons Foundation CMAP database.

    Shell

  5. demux-notes demux-notes Public

    Notes on demultiplexing 515Y reads with cutadapt

    Python 1