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Dispersive material html page #1249

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Dispersive material html page #1249

wants to merge 101 commits into from

Commits on Jan 27, 2022

  1. Added EM and APM base_classes and MPES, EM, APM, Ellips application d… 

    …efinitions
    @sherjeelshabih
    sherjeelshabih committed Jan 27, 2022
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  2. Removed not needed Application definitions for now

    @sherjeelshabih
    sherjeelshabih committed Jan 27, 2022
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  3. Added required base_class by MPES reader

    @sherjeelshabih
    sherjeelshabih committed Jan 27, 2022
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Commits on Feb 1, 2022

  1. Updated version of NXellipsometry.nxdl file

    @cmmngr
    cmmngr committed Feb 1, 2022
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  2. NXellipsometry.nxdl NX_COMPLEX changed to NX_NUMBER

    @cmmngr
    cmmngr committed Feb 1, 2022
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Commits on Feb 4, 2022

  1. Added definitions for default plottables NXapm

    @mkuehbach
    mkuehbach committed Feb 4, 2022
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Commits on Feb 14, 2022

  1. Updated NXellipsometry with attribute in the plot group

    @sherjeelshabih
    sherjeelshabih committed Feb 14, 2022
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  2. Updated doc string of axes attribute in plot in entry.

    @cmmngr
    cmmngr committed Feb 14, 2022
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Commits on Feb 18, 2022

  1. Create nexus-fairmat-gen-docs 

    initial commit docs-gen workflow
    @mkuehbach
    mkuehbach authored Feb 18, 2022
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  2. Delete nexus-fairmat-gen-docs 

    typo
    @mkuehbach
    mkuehbach authored Feb 18, 2022
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  3. Create nexus-fairmat-gen-docs.yml 

    initial commit docs-gen workflow
    @mkuehbach
    mkuehbach authored Feb 18, 2022
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  4. Update nexus-fairmat-gen-docs.yml

    @sanbrock
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  5. Create nexus-fairmat-gen-docs.yml 

    experimenting with using original nexus_definitions docs publication workflow file with our fork of the NIAC repo
    @mkuehbach
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  6. Update nexus-fairmat-gen-docs.yml 

    restricted workflow to treat only pushes on the fairmat branch and support for manual triggering of the action
    @mkuehbach
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  7. Update nexus-fairmat-gen-docs.yml 

    remove default steps executed when building nexus pdf manual
    @mkuehbach
    mkuehbach authored Feb 18, 2022
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Commits on Feb 28, 2022

  1. Integrated Tommaso Pincelli's customization of the NeXus manual for t… 

    …he NeXus-FAIRmat-Proposal and modified descriptions, taking into account technique-specific rst documents from Carola, Tamas, and MarkusK, and templates for rerouting the manual into versioned sub-directories
    @mkuehbach
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Commits on Mar 1, 2022

  1. Fixed ellipsometry, appdefs and makefile

    @mkuehbach
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Commits on Mar 22, 2022

  1. updates to NXmpes and related base classes, including manually merged… 

    … extentions to existing base classes
    Laurenz Rettig committed Mar 22, 2022
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Commits on Mar 30, 2022

  1. __init__.py files added

    @aalbino2
    aalbino2 committed Mar 30, 2022
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Commits on Mar 31, 2022

  1. Moved all FAIRmat-related base and appdefs to contributed_defs, repla… 

    …ced NXellipsometry block selector for plain rich text, file ending yaml should be changed in the future, FAIRmat-related NXDLs were updated having now a single-line docstring
    @mkuehbach
    mkuehbach committed Mar 31, 2022
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  2. Fixed single line docstring scanbox and stage_lab

    @mkuehbach
    mkuehbach committed Mar 31, 2022
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  3. Recovered NXdeflector, edited structure.rst from FAIRmat hunted for N… 

    …Xsample, NXmirror
    @mkuehbach
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Commits on Jun 17, 2022

  1. Updated arpes definitions for fairmat-pages

    @domna
    domna committed Jun 17, 2022
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  2. Fixes pipe error

    @domna
    domna committed Jun 17, 2022
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Commits on Jun 20, 2022

  1. Renams spindispersion fields + small docstring corrections

    @domna
    domna committed Jun 20, 2022
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  2. Fixes some rst formattings for proper html output

    @domna
    domna committed Jun 20, 2022
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  3. Additional naming symplification in NXspindisperision

    @domna
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Commits on Jun 21, 2022

  1. Merge pull request #2 from FAIRmat-Experimental/fairmat-pages-mpes 

    Updated arpes definitions for fairmat-pages
    @sanbrock
    sanbrock authored Jun 21, 2022
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  2. Updates xsi:schemaLocation

    @domna
    domna committed Jun 21, 2022
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Commits on Jun 24, 2022

  1. Merge pull request #4 from nexusformat/main 

     Update our forked main branch with remote developments
    @sanbrock
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  2. Merge branch 'main' into fairmat

    @sanbrock
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Commits on Jun 30, 2022

  1. added Appdef for IV_temp

    @sanbrock
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Commits on Jul 1, 2022

  1. fix type=NX_DIMENSIONLESS in NXxpcs

    @sanbrock
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Commits on Jul 6, 2022

  1. local fix for bad use of NXtransformations in NXcxi_ptycho

    @sanbrock
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Commits on Jul 7, 2022

  1. Updated introductory sections for the mainpage, em, and apm of the pr… 

    …oposal guiding to appdefs and base classes
    @mkuehbach
    mkuehbach committed Jul 7, 2022
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  2. Updated mainpage proposal

    @mkuehbach
    mkuehbach committed Jul 7, 2022
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Commits on Jul 11, 2022

  1. Reference to deprecated EM classes, and added template for IVtemp cur… 

    …ves appdef
    @mkuehbach
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  2. Fixed dimensions index nx, ny issue in contributed/NXbeam, and edited… 

    … NXIVtemp to enable addition of EPICS to proposal and recompile nexus-fairmat-proposal
    @mkuehbach
    mkuehbach committed Jul 11, 2022
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  3. Deactivated line in Makefile that became dysfunctional with NeXus Cod… 

    …e Camp 202206 changes
    @mkuehbach
    mkuehbach committed Jul 11, 2022
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Commits on Aug 3, 2022

  1. Adds transmission appdef

    @domna
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Commits on Aug 9, 2022

  1. Updates NXtransmission

    @domna
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Commits on Aug 12, 2022

  1. Updates NXmpes with correct path for NXmanipulator

    @domna
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Commits on Aug 15, 2022

  1. Updates NXmpes appdef

    @domna
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Commits on Aug 29, 2022

  1. Allows recommended for attributes

    @domna
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Commits on Sep 1, 2022

  1. Added latest NXiv_temp to contributed

    @sherjeelshabih
    sherjeelshabih committed Sep 1, 2022
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Commits on Sep 2, 2022

  1. Updated operator to be open to be named as user prefers

    @sherjeelshabih
    sherjeelshabih committed Sep 2, 2022
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  2. Adds NXuser to NXmpes

    @domna
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  3. Added extra metadata fields to NXiv_temp

    @sherjeelshabih
    sherjeelshabih committed Sep 2, 2022
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  4. Sprint9 shape and geometry, updated NXem, and paraprobe application d… 

    …efinitions and base classes collected, and tested with make local
    @mkuehbach
    mkuehbach committed Sep 2, 2022
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Commits on Sep 3, 2022

  1. Made short title for sections on the front page shorter and better ma… 

    …tching the FAIRmat proposal names
    @mkuehbach
    mkuehbach committed Sep 3, 2022
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  2. Small edits on proposed titles

    @mkuehbach
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Commits on Sep 4, 2022

  1. Fixed NXapm, NXion, and NXpulser_apm to reflect changes in apm parser… 

    … for sprint9
    @mkuehbach
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Commits on Sep 5, 2022

  1. Updates NXellipsometry to use NXuser group instead of operator field

    @domna
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  2. Renamed NXiv_temp to NXtransport. Added NXpid and other changes to ba… 

    …se classes
    @sherjeelshabih
    sherjeelshabih committed Sep 5, 2022
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Commits on Sep 6, 2022

  1. Fix issue with NXtransport having two rec attributes

    @sherjeelshabih
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Commits on Sep 7, 2022

  1. Added NXsensor_scan and extended NXiv_temp from it

    @sherjeelshabih
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  2. consolidated sprint9 results for appdefs/base classes for apm, em, sh… 

    …ape/geometry, microstructures, paraprobe
    @mkuehbach
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  3. Merge pull request #6 from FAIRmat-Experimental/sprint9_nexus_em_apm_… 

    …cg_ms

Sprint9 shape and geometry, updated NXem, and paraprobe application d…
    @sanbrock
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  4. Fixed errors in new NXiv_temp and NXsensor_scan

    @sherjeelshabih
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  5. Ran the NXiv_temp and NXsensor_scan through yaml2nxdl

    @sherjeelshabih
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  6. Ran NXpid through yaml2nxdl

    @sherjeelshabih
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Commits on Sep 13, 2022

  1. sprint9_dev_frozen_apm_em

    @mkuehbach
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Commits on Sep 14, 2022

  1. added missing deps supporting syntax check workflows

    @mkuehbach
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  2. added workflow dispatch option

    @mkuehbach
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  3. forcing action triggering on push for testing

    @mkuehbach
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  4. testing

    @mkuehbach
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  5. Try env workflow w/o versions

    @domna
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  6. Adds conda-forge to workflow

    @domna
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  7. Add conda-forge as channel

    @domna
    domna committed Sep 14, 2022
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  8. Manually install sphinx_comment

    @domna
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  9. Install sphinx_comments via pip

    @domna
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  10. Install sphinx-comments instead of sphinx_comments

    @domna
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  11. Reset github action to push, prs and manually

    @domna
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  12. Merge pull request #8 from FAIRmat-Experimental/sprint9_dev_frozen_ap… 

    …m_em

ssprint9 dev frozen apm em
    @sanbrock
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  13. Resets syntax-check action to previous version

    @domna
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  14. Run syntax check on fairmat branch, too

    @domna
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  15. Added extends to NXiv_temp

    @sherjeelshabih
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Commits on Sep 15, 2022

  1. Merge pull request #9 from FAIRmat-Experimental/NXiv_temp_extends_NXs… 

    …ensor_scan

Added extends to NXiv_temp
    @sanbrock
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Commits on Sep 16, 2022

  1. Merge pull request #10 from nexusformat/main 

    Update main to NIAC version
    @sanbrock
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Commits on Dec 15, 2022

  1. fix NXxpcs units issue

    @sanbrock
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Commits on Jan 27, 2023

  1. Merge pull request #13 from nexusformat/main 

    update from NIAC
    @sanbrock
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  2. definitions update from NIAC

    @sanbrock
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  3. Atom Types is included in mpes

    RubelMozumder committed Jan 27, 2023
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  4. Merge pull request #14 from FAIRmat-Experimental/IncludingAtomType 

    Atom Types is included in NXmpes application
    @RubelMozumder
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Commits on Jan 31, 2023

  1. Revert "Merge pull request #14 from FAIRmat-Experimental/IncludingAto… 

    …mType"

This reverts commit 7e16207, reversing
changes made to 9f5d901.
    RubelMozumder committed Jan 31, 2023
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  2. new CI

    @sanbrock
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  3. fix merge conflicts

    @sanbrock
    sanbrock committed Jan 31, 2023
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  4. fix merge resolution

    @sanbrock
    sanbrock committed Jan 31, 2023
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  5. fix requirements after merge

    @sanbrock
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  6. donot perform pdf generation (because of minor errors); accept WARNIN… 

    …GS during html generatin (e.g. duplicate definitions base_class and contributed; NXareprute Line endings)
    @sanbrock
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  7. fix removing the pdf generation

    @sanbrock
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Commits on Feb 1, 2023

  1. Dispersion application definition (#11) 

    * Adds dispersion nxdls

* Adds NXdispersion class

* Adds entry to NXdispersive_material

* Creates base class for dispersion function parameters

* Adds identifier and refines units for dispersions

* Fixes typo

* Sets literature_references to recommended

* Makes dispersion table & function recommeded

* Corrects typo in dispersive_material

* Renames units to parameter_units

* Adds docstrings

* Corrects docstring for dispersion_function

* Adds docstring for colloquial_name

* Adds NXsample to dispersive_material
    @domna
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  2. Changes for apm and em within search sprint

    markus.kuehbach committed Feb 1, 2023
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  3. Updates or adds atom_types field (#17)

    @domna
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  4. Updates atom_types in NXmpes

    @domna
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Commits on Feb 7, 2023

  1. Copying yaml files from data-modeling main branch.

    RubelMozumder committed Feb 7, 2023
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Commits on Feb 8, 2023

  1. NXdispersion refinements (#19) 

    * Uses NXcite for references

* Fixes types in appdef and adds atom_types

* Adds plot NXdata group to dispersions

* Copying yaml files from data-modeling main branch.

* Adds yml files

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Co-authored-by: RubelMozumder <[email protected]>
    @domna
    domna and RubelMozumder authored Feb 8, 2023
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Commits on Feb 10, 2023

  1. Add min/max values for wavelength and energy

    @domna
    domna committed Feb 10, 2023
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  2. Adds units fields for wavelength and energy

    @domna
    domna committed Feb 10, 2023
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Commits on Feb 14, 2023

  1. Merge pull request #21 from FAIRmat-Experimental/dispersion-appdef-re… 

    …finements

Dispersion appdef refinements
    @sanbrock
    sanbrock authored Feb 14, 2023
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Commits on Mar 16, 2023

  1. Adds html frontpage docs for dispersive material

    @domna
    domna committed Mar 16, 2023
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