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new module: lofreq/viterbi #5158

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4 tasks done
MarieLataretu opened this issue Mar 18, 2024 · 0 comments · Fixed by #5197
Closed
4 tasks done

new module: lofreq/viterbi #5158

MarieLataretu opened this issue Mar 18, 2024 · 0 comments · Fixed by #5197
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@MarieLataretu

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@MarieLataretu
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Is there an existing module for this?

  • I have searched for the existing module

Is there an open PR for this?

  • I have searched for existing PRs

Is there an open issue for this?

  • I have searched for existing issues

Are you going to work on this?

  • If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module
@MarieLataretu MarieLataretu added the new module Adding a new module label Mar 18, 2024
@MarieLataretu MarieLataretu self-assigned this Mar 18, 2024
@MarieLataretu MarieLataretu moved this to In progress in Hackathon: May 2024 Mar 18, 2024
@MarieLataretu MarieLataretu removed the new module Adding a new module label Mar 18, 2024
MarieLataretu added a commit to MarieLataretu/modules that referenced this issue Mar 18, 2024
@MarieLataretu
added new module lofraq/viterbi; solves new module: lofreq/viterbi nf…
48d5037 
…-core#5158
@MarieLataretu MarieLataretu mentioned this issue Mar 18, 2024
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17 tasks
@MarieLataretu MarieLataretu moved this from In progress to Ready for review in Hackathon: May 2024 Mar 18, 2024
MarieLataretu added a commit to MarieLataretu/modules that referenced this issue Mar 19, 2024
@MarieLataretu
added new module lofraq/viterbi; solves new module: lofreq/viterbi nf…
9234a4c 
…-core#5158
github-merge-queue bot pushed a commit that referenced this issue Mar 19, 2024
@MarieLataretu
added new module lofraq/viterbi; solves new module: lofreq/viterbi #5158
26dc61f 
 (#5197)

* added new module lofraq/viterbi; solves new module: lofreq/viterbi #5158

* added new module lofraq/viterbi; solves new module: lofreq/viterbi #5158

* removed yml schema comments

* added samtools as conda dependency; chnaged container build version to py310h47ef89e_10; updated test snapshot
jvfe added a commit to jvfe/modules that referenced this issue Mar 19, 2024
@jvfe
Merge branch 'master' into nf-test_phispy
e16f6f9 
* master:
  Fix test for FASTQ_FASTQC_UMITOOLS_FASTP which included an absolute path in the snapshot. (nf-core#5278)
  added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158 (nf-core#5197)
  Update glimpse/phase output channel to phased_variants nf-core#5172 (nf-core#5174)
  Add module: GTFSORT (nf-core#5237)
  add nf-test to bedtools/sort - nf-core#3936 (nf-core#5221)
  addedd optional output channel for lib files (nf-core#5257)
vlebars pushed a commit to vlebars/modules that referenced this issue Mar 20, 2024
@MarieLataretu
added new module lofraq/viterbi; solves new module: lofreq/viterbi nf…
12929d6 
…-core#5158 (nf-core#5197)

* added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158

* added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158

* removed yml schema comments

* added samtools as conda dependency; chnaged container build version to py310h47ef89e_10; updated test snapshot
@mapo9 mapo9 moved this from Ready for review to Done in Hackathon: May 2024 Mar 20, 2024
tucano pushed a commit to tucano/modules that referenced this issue Mar 20, 2024
@MarieLataretu @tucano
added new module lofraq/viterbi; solves new module: lofreq/viterbi nf…
829dbb5 
…-core#5158 (nf-core#5197)

* added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158

* added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158

* removed yml schema comments

* added samtools as conda dependency; chnaged container build version to py310h47ef89e_10; updated test snapshot
jennylsmith pushed a commit to RSC-RP/modules that referenced this issue Mar 20, 2024
@MarieLataretu @jennylsmith
added new module lofraq/viterbi; solves new module: lofreq/viterbi nf…
83583df 
…-core#5158 (nf-core#5197)

* added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158

* added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158

* removed yml schema comments

* added samtools as conda dependency; chnaged container build version to py310h47ef89e_10; updated test snapshot
alexnater pushed a commit to alexnater/nf-core-modules that referenced this issue Mar 21, 2024
@MarieLataretu
added new module lofraq/viterbi; solves new module: lofreq/viterbi nf…
4e95572 
…-core#5158 (nf-core#5197)

* added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158

* added new module lofraq/viterbi; solves new module: lofreq/viterbi nf-core#5158

* removed yml schema comments

* added samtools as conda dependency; chnaged container build version to py310h47ef89e_10; updated test snapshot
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added new module lofraq/viterbi; solves new module: lofreq/viterbi #5158 MarieLataretu/modules
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