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Fix issue where tool and subtool have the same name #7668

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Fix issue where tool and subtool have the same name

Fix issue where tool and subtool have the same name #7668

Run time

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Job Run time
Get test file matrix
2s
Get test file matrix
2s
setup (3.8, ubuntu-latest)
1s
setup (3.8, ubuntu-latest)
1s
setup (3.12, ubuntu-latest)
1s
setup (3.12, ubuntu-latest)
1s
setup (3.8, ubuntu-20.04)
1s
setup (3.8, ubuntu-20.04)
1s
Run test_pipelines.py with Python 3.8 on ubuntu-latest
1m 7s
Run test_pipelines.py with Python 3.8 on ubuntu-latest
1m 7s
Run test_modules.py with Python 3.8 on ubuntu-latest
1m 3s
Run test_modules.py with Python 3.8 on ubuntu-latest
1m 3s
Run test_components.py with Python 3.8 on ubuntu-latest
11m 36s
Run test_components.py with Python 3.8 on ubuntu-latest
12m 25s
Run subworkflows/test_remove.py with Python 3.8 on ubuntu-latest
1m 57s
Run subworkflows/test_remove.py with Python 3.8 on ubuntu-latest
1m 57s
Run subworkflows/test_info.py with Python 3.8 on ubuntu-latest
1m 28s
Run subworkflows/test_info.py with Python 3.8 on ubuntu-latest
1m 28s
Run subworkflows/test_install.py with Python 3.8 on ubuntu-latest
2m 19s
Run subworkflows/test_install.py with Python 3.8 on ubuntu-latest
2m 19s
Run subworkflows/test_lint.py with Python 3.8 on ubuntu-latest
3m 6s
Run subworkflows/test_lint.py with Python 3.8 on ubuntu-latest
3m 6s
Run subworkflows/test_list.py with Python 3.8 on ubuntu-latest
1m 18s
Run subworkflows/test_list.py with Python 3.8 on ubuntu-latest
1m 18s
Run subworkflows/test_create.py with Python 3.8 on ubuntu-latest
1m 24s
Run subworkflows/test_create.py with Python 3.8 on ubuntu-latest
1m 24s
Run subworkflows/test_update.py with Python 3.8 on ubuntu-latest
6m 47s
Run subworkflows/test_update.py with Python 3.8 on ubuntu-latest
6m 47s
Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-latest
1m 22s
Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-latest
1m 22s
Run pipelines/test_create_app.py with Python 3.8 on ubuntu-latest
1m 56s
Run pipelines/test_create_app.py with Python 3.8 on ubuntu-latest
1m 56s
Run pipelines/test_schema.py with Python 3.8 on ubuntu-latest
2m 45s
Run pipelines/test_schema.py with Python 3.8 on ubuntu-latest
2m 51s
Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-latest
1m 18s
Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-latest
1m 18s
Run pipelines/test_download.py with Python 3.8 on ubuntu-latest
1m 14s
Run pipelines/test_download.py with Python 3.8 on ubuntu-latest
1m 14s
Run pipelines/test_sync.py with Python 3.8 on ubuntu-latest
1m 42s
Run pipelines/test_sync.py with Python 3.8 on ubuntu-latest
1m 42s
Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-latest
1m 6s
Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-latest
1m 6s
Run pipelines/test_lint.py with Python 3.8 on ubuntu-latest
1m 32s
Run pipelines/test_lint.py with Python 3.8 on ubuntu-latest
1m 32s
Run pipelines/test_list.py with Python 3.8 on ubuntu-latest
53s
Run pipelines/test_list.py with Python 3.8 on ubuntu-latest
53s
Run pipelines/test_create.py with Python 3.8 on ubuntu-latest
59s
Run pipelines/test_create.py with Python 3.8 on ubuntu-latest
59s
Run pipelines/test_params_file.py with Python 3.8 on ubuntu-latest
1m 3s
Run pipelines/test_params_file.py with Python 3.8 on ubuntu-latest
1m 3s
Run pipelines/test_launch.py with Python 3.8 on ubuntu-latest
2m 2s
Run pipelines/test_launch.py with Python 3.8 on ubuntu-latest
2m 2s
Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-latest
1m 9s
Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-latest
1m 9s
Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-latest
1m 21s
Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-latest
1m 21s
Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-latest
1m 23s
Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-latest
1m 23s
Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-latest
1m 19s
Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-latest
1m 19s
Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-latest
1m 6s
Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-latest
1m 6s
Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-latest
1m 55s
Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-latest
1m 55s
Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-latest
1m 30s
Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-latest
1m 30s
Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-latest
1m 9s
Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-latest
1m 9s
Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-latest
1m 1s
Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-latest
1m 1s
Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-latest
1m 9s
Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-latest
1m 9s
Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-latest
1m 8s
Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-latest
1m 8s
Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-latest
59s
Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-latest
59s
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-latest
1m 2s
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-latest
1m 2s
Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-latest
1m 33s
Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-latest
1m 33s
Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-latest
1m 4s
Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-latest
1m 4s
Run test_cli.py with Python 3.8 on ubuntu-latest
50s
Run test_cli.py with Python 3.8 on ubuntu-latest
50s
Run test_test_utils.py with Python 3.8 on ubuntu-latest
45s
Run test_test_utils.py with Python 3.8 on ubuntu-latest
45s
Run modules/test_modules_json.py with Python 3.8 on ubuntu-latest
2m 25s
Run modules/test_modules_json.py with Python 3.8 on ubuntu-latest
2m 25s
Run modules/test_remove.py with Python 3.8 on ubuntu-latest
1m 18s
Run modules/test_remove.py with Python 3.8 on ubuntu-latest
1m 18s
Run modules/test_info.py with Python 3.8 on ubuntu-latest
1m 18s
Run modules/test_info.py with Python 3.8 on ubuntu-latest
1m 18s
Run modules/test_install.py with Python 3.8 on ubuntu-latest
1m 54s
Run modules/test_install.py with Python 3.8 on ubuntu-latest
1m 54s
Run modules/test_patch.py with Python 3.8 on ubuntu-latest
1m 40s
Run modules/test_patch.py with Python 3.8 on ubuntu-latest
1m 40s
Run modules/test_lint.py with Python 3.8 on ubuntu-latest
3m 46s
Run modules/test_lint.py with Python 3.8 on ubuntu-latest
3m 46s
Run modules/test_bump_versions.py with Python 3.8 on ubuntu-latest
1m 22s
Run modules/test_bump_versions.py with Python 3.8 on ubuntu-latest
1m 22s
Run modules/test_list.py with Python 3.8 on ubuntu-latest
1m 45s
Run modules/test_list.py with Python 3.8 on ubuntu-latest
1m 45s
Run modules/test_create.py with Python 3.8 on ubuntu-latest
1m 22s
Run modules/test_create.py with Python 3.8 on ubuntu-latest
1m 22s
Run modules/test_update.py with Python 3.8 on ubuntu-latest
2m 47s
Run modules/test_update.py with Python 3.8 on ubuntu-latest
2m 47s
Run test_subworkflows.py with Python 3.8 on ubuntu-latest
1m 5s
Run test_subworkflows.py with Python 3.8 on ubuntu-latest
1m 5s
Run test_lint_utils.py with Python 3.8 on ubuntu-latest
1m 5s
Run test_lint_utils.py with Python 3.8 on ubuntu-latest
1m 5s
Run test_utils.py with Python 3.8 on ubuntu-latest
1m 57s
Run test_utils.py with Python 3.8 on ubuntu-latest
1m 57s
coverage
1s
coverage
1m 2s
3h 10m 16s