Template: Update modules and and local subworkflow syntax #7735
mirpedrolAnnotations
3 errors and 52 warnings
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Run modules/test_info.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
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Run pipelines/test_schema.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
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Run modules/test_lint.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
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Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_subworkflows.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_modules.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_lint_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_cli.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_pipelines.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_params_file.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_create.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run subworkflows/test_list.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run subworkflows/test_remove.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run subworkflows/test_create.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_bump_versions.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_info.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run subworkflows/test_info.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_install.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_list.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_remove.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_patch.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_download.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_sync.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_create.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_lint.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_create_app.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_modules_json.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_list.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run subworkflows/test_install.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_launch.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_test_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run pipelines/test_schema.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_update.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run subworkflows/test_lint.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run modules/test_lint.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run subworkflows/test_update.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Run test_components.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
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Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
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coverage_modules__test_bump_versions.py
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5.67 KB |
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coverage_modules__test_create.py
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5.62 KB |
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coverage_modules__test_install.py
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5.68 KB |
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coverage_modules__test_list.py
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5.73 KB |
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coverage_modules__test_modules_json.py
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5.8 KB |
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coverage_modules__test_patch.py
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5.88 KB |
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coverage_modules__test_remove.py
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5.71 KB |
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coverage_modules__test_update.py
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5.92 KB |
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coverage_pipelines__lint__test_actions_awsfulltest.py
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6.41 KB |
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coverage_pipelines__lint__test_actions_awstest.py
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6.41 KB |
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coverage_pipelines__lint__test_actions_ci.py
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6.41 KB |
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coverage_pipelines__lint__test_actions_schema_validation.py
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6.41 KB |
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coverage_pipelines__lint__test_configs.py
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6.42 KB |
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coverage_pipelines__lint__test_files_exist.py
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6.42 KB |
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coverage_pipelines__lint__test_files_unchanged.py
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6.43 KB |
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coverage_pipelines__lint__test_merge_markers.py
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6.41 KB |
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coverage_pipelines__lint__test_modules_json.py
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6.41 KB |
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coverage_pipelines__lint__test_multiqc_config.py
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6.46 KB |
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coverage_pipelines__lint__test_nextflow_config.py
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6.46 KB |
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coverage_pipelines__lint__test_nfcore_yml.py
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6.41 KB |
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coverage_pipelines__lint__test_plugin_includes.py
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6.4 KB |
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coverage_pipelines__lint__test_template_strings.py
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6.71 KB |
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coverage_pipelines__lint__test_version_consistency.py
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6.47 KB |
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coverage_pipelines__test_bump_version.py
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5.15 KB |
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coverage_pipelines__test_create.py
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5.09 KB |
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coverage_pipelines__test_create_app.py
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5.12 KB |
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coverage_pipelines__test_create_logo.py
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5.11 KB |
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coverage_pipelines__test_download.py
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5.5 KB |
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coverage_pipelines__test_launch.py
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5.29 KB |
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coverage_pipelines__test_lint.py
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6.89 KB |
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coverage_pipelines__test_list.py
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5.01 KB |
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coverage_pipelines__test_params_file.py
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5.17 KB |
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coverage_pipelines__test_refgenie.py
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5.03 KB |
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coverage_pipelines__test_sync.py
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5.21 KB |
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coverage_subworkflows__test_create.py
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6.48 KB |
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coverage_subworkflows__test_info.py
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6.57 KB |
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coverage_subworkflows__test_install.py
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6.53 KB |
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coverage_subworkflows__test_lint.py
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6.68 KB |
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coverage_subworkflows__test_list.py
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6.56 KB |
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coverage_subworkflows__test_remove.py
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6.58 KB |
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coverage_subworkflows__test_update.py
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6.66 KB |
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coverage_test_cli.py
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6.83 KB |
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coverage_test_components.py
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5.37 KB |
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coverage_test_lint_utils.py
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4.98 KB |
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coverage_test_modules.py
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5.61 KB |
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coverage_test_pipelines.py
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4.98 KB |
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coverage_test_subworkflows.py
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6.28 KB |
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coverage_test_test_utils.py
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4.99 KB |
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coverage_test_utils.py
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5.14 KB |
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