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added patch command for subworkflows #6563

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added patch command for subworkflows

added patch command for subworkflows #6563

Triggered via pull request March 18, 2024 11:20
@ctunictuni
opened #2861
ctuni:master
Status Failure
Total duration 2m 59s
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pytest.yml

on: pull_request
Matrix: setup
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Matrix: test
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19 errors and 20 warnings
Run test_sync.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_test_utils.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_create_logo.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_schema.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_list.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_bump_version.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_cli.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_params_file.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_create.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_refgenie.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_modules.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_subworkflows.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_lint.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_launch.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_lint_utils.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_licenses.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_utils.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_components.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_download.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_sync.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_test_utils.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_create_logo.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_schema.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_list.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_bump_version.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_cli.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_params_file.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_create.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_refgenie.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_modules.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_subworkflows.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_lint.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_launch.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_lint_utils.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_licenses.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_utils.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_components.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_download.py with Python 3.8 on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run test_download.py with Python 3.8 on ubuntu-latest
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/