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Merge pull request #2613 from mashehu/fix-readme-screenshots
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fix rich-codex screenshots
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mashehu authored Dec 20, 2023
2 parents 509acf4 + 4009943 commit e90311b
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15 changes: 15 additions & 0 deletions .github/workflows/rich-codex.yml
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,21 @@ jobs:
- name: Install Nextflow
uses: nf-core/setup-nextflow@v1

- name: Cache nf-test installation
id: cache-software
uses: actions/cache@v3
with:
path: |
/usr/local/bin/nf-test
/home/runner/.nf-test/nf-test.jar
key: ${{ runner.os }}-nftest-${{ env.date }}

- name: Install nf-test
if: steps.cache-software.outputs.cache-hit != 'true'
run: |
wget -qO- https://code.askimed.com/install/nf-test | bash
sudo mv nf-test /usr/local/bin/
- name: Install nf-core/tools
run: pip install git+https://github.com/nf-core/tools.git@dev

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7 changes: 5 additions & 2 deletions README.md
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Expand Up @@ -900,7 +900,7 @@ If you want to make a minor change to a locally installed module but still keep

<!-- RICH-CODEX
working_dir: tmp/nf-core-nextbigthing
before_command: sed "s/process_medium/process_low/g" modules/nf-core/modules/fastqc/main.nf > modules/nf-core/modules/fastqc/main.nf.patch && mv modules/nf-core/modules/fastqc/main.nf.patch modules/nf-core/modules/fastqc/main.nf
before_command: sed "s/process_medium/process_low/g" modules/nf-core/fastqc/main.nf > modules/nf-core/fastqc/main.nf.patch && mv modules/nf-core/fastqc/main.nf.patch modules/nf-core/fastqc/main.nf
-->

![`nf-core modules patch fastqc`](docs/images/nf-core-modules-patch.svg)
Expand Down Expand Up @@ -965,7 +965,7 @@ extra_env:
PROFILE: 'conda'
-->

![`nf-core modules test fastqc --no-prompts --force`](docs/images/nf-core-modules-test.svg)
![`nf-core modules test fastqc --no-prompts`](docs/images/nf-core-modules-test.svg)

In case you changed something in the test and want to update the snapshot, run

Expand Down Expand Up @@ -1076,6 +1076,9 @@ This shows documentation about the subworkflow on the command line, similar to w
working_dir: tmp/nf-core-nextbigthing
before_command: >
echo "repository_type: pipeline" >> .nf-core.yml
head: 15
tail: 10
-->

![`nf-core subworkflows info bam_rseqc`](docs/images/nf-core-subworkflows-info.svg)
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