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bump nf-schema to v2.1.1 in the template #3177

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merged 2 commits into from
Sep 20, 2024
Merged

bump nf-schema to v2.1.1 in the template #3177

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1e18f14
bump nf-schema to v2.1.1 in the template
nvnieuwk Sep 20, 2024
e2c4740
remove help params from ignore params
nvnieuwk Sep 20, 2024
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4 changes: 2 additions & 2 deletions nf_core/pipeline-template/nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -274,11 +274,11 @@ manifest {
{% if nf_schema -%}
// Nextflow plugins
plugins {
id '[email protected].0' // Validation of pipeline parameters and creation of an input channel from a sample sheet
id '[email protected].1' // Validation of pipeline parameters and creation of an input channel from a sample sheet
}

validation {
defaultIgnoreParams = ["genomes", "helpFull", "showHidden", "help-full", "show-hidden"] // The last 4 parameters are here because of a bug in nf-schema. This will be fixed in a later version
defaultIgnoreParams = ["genomes"]
help {
enabled = true
command = "nextflow run $manifest.name -profile <docker/singularity/.../institute> --input samplesheet.csv --outdir <OUTDIR>"
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