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Draft MEDIC dynamic distortion correction method #435

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wants to merge 26 commits into from
Closed

Draft MEDIC dynamic distortion correction method #435

wants to merge 26 commits into from

Commits on Mar 10, 2024

  1. Start working on MEDIC pipeline.

    @tsalo
    tsalo committed Mar 10, 2024
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  2. More work.

    @tsalo
    tsalo committed Mar 10, 2024
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  3. More work.

    @tsalo
    tsalo committed Mar 10, 2024
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  4. More work.

    @tsalo
    tsalo committed Mar 10, 2024
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Commits on Mar 20, 2024

  1. Add CompileMRI (ROMEO) to Dockerfile.

    @tsalo
    tsalo committed Mar 20, 2024
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Commits on Mar 24, 2024

  1. Update medic.py

    @tsalo
    tsalo committed Mar 24, 2024
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  2. Update medic.py

    @tsalo
    tsalo committed Mar 24, 2024
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Commits on Mar 25, 2024

  1. Keep working.

    @tsalo
    tsalo committed Mar 25, 2024
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Commits on Apr 6, 2024

  1. Keep working.

    @tsalo
    tsalo committed Apr 6, 2024
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  2. Update medic.py

    @tsalo
    tsalo committed Apr 6, 2024
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  3. Complete draft of init_mcpc_3d_s_wf.

    @tsalo
    tsalo committed Apr 6, 2024
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  4. Use whole files.

    @tsalo
    tsalo committed Apr 6, 2024
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  5. Finish draft of init_process_volume_wf.

    @tsalo
    tsalo committed Apr 6, 2024
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  6. Keep going.

    @tsalo
    tsalo committed Apr 6, 2024
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Commits on Apr 7, 2024

  1. Lots of progress.

    @tsalo
    tsalo committed Apr 7, 2024
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  2. Get non-automask running.

    @tsalo
    tsalo committed Apr 7, 2024
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  3. Finish drafting the MEDIC workflow.

    @tsalo
    tsalo committed Apr 7, 2024
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  4. Mostly running. 

    The quality image from ROMEO still has NaNs in it.
    @tsalo
    tsalo committed Apr 7, 2024
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  5. Still a few small issues.

    @tsalo
    tsalo committed Apr 7, 2024
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  6. It runs!

    @tsalo
    tsalo committed Apr 7, 2024
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  7. Fix style issues.

    @tsalo
    tsalo committed Apr 7, 2024
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  8. Add test data.

    @tsalo
    tsalo committed Apr 7, 2024
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  9. Set max scipy version because of error.

    @tsalo
    tsalo committed Apr 7, 2024
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  10. Update misc.py

    @tsalo
    tsalo committed Apr 7, 2024
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  11. Update docstrings.

    @tsalo
    tsalo committed Apr 7, 2024
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  12. Update medic.py

    @tsalo
    tsalo committed Apr 7, 2024
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