[NTR] CGRP-expressing neuron (#2712)

Fixes #2445

src/ontology/cl-edit.owl

@@ -3079,6 +3079,7 @@ Declaration(Class(obo:CL_4042029))
 Declaration(Class(obo:CL_4042030))
 Declaration(Class(obo:CL_4042031))
 Declaration(Class(obo:CL_4042032))
+Declaration(Class(obo:CL_4042033))
 Declaration(Class(obo:CL_4047006))
 Declaration(Class(obo:CL_4047007))
 Declaration(Class(obo:CL_4047011))
@@ -3347,7 +3348,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition")
 
 AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to")
 
-# Annotation Property: obo:IAO_0000700 (preferred_root)
+# Annotation Property: obo:IAO_0000700 (has ontology root term)
 
 AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root")
 
@@ -3441,11 +3442,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")
 
 AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")
 
-# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym)
+# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym)
 
 AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym")
 
-# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym)
+# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym)
 
 AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")
 
@@ -6845,6 +6846,7 @@ SubClassOf(obo:CL_0000378 obo:CL_0000630)
 AnnotationAssertion(rdfs:label obo:CL_0000379 "sensory processing neuron")
 SubClassOf(obo:CL_0000379 obo:CL_0000540)
 SubClassOf(obo:CL_0000379 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017))
+SubClassOf(obo:CL_0000379 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050893))
 
 # Class: obo:CL_0000380 (thecogen cell)
 
@@ -32639,6 +32641,18 @@ SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002202 obo:UBERON_0004026
 SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534))
 SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000012318))
 
+# Class: obo:CL_4042033 (CGRP-expressing neuron)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34061020") obo:IAO_0000115 obo:CL_4042033 "An interneuron neuron characterized by the expression of calcitonin gene-related peptide (CGRP), a 37-amino acid neuropeptide. This neuron type is involved in nociception and pain modulation by facilitating the transmission of nociceptive signals from peripheral sensory nerve endings to central nervous system structures. This neuron type is found in the dorsal root ganglia (DRG) and trigeminal ganglion, and the spinal cord dorsal horn.")
+AnnotationAssertion(terms:contributor obo:CL_4042033 <https://orcid.org/0000-0002-0098-8958>)
+AnnotationAssertion(terms:date obo:CL_4042033 "2024-10-30T15:35:08Z"^^xsd:dateTime)
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34061020") oboInOwl:hasExactSynonym obo:CL_4042033 "Calcitonin gene-related peptide neuron")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34061020") oboInOwl:hasRelatedSynonym obo:CL_4042033 "CGRP-expressing interneuron")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34061020") oboInOwl:hasRelatedSynonym obo:CL_4042033 "CGRP-positive neuron")
+AnnotationAssertion(rdfs:label obo:CL_4042033 "CGRP-expressing neuron"@en)
+SubClassOf(obo:CL_4042033 obo:CL_0000526)
+SubClassOf(obo:CL_4042033 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017))
+
 # Class: obo:CL_4047006 (fetal artery endothelial cell)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_4047006 "An endothelial cell that lines an artery in the fetal circulatory system.")

src/ontology/components/mappings.owl

@@ -819,6 +819,15 @@
         <owl:annotatedTarget>ZFA:0009066</owl:annotatedTarget>
         <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/UnspecifiedMatching"/>
     </owl:Axiom>
+    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000117">
+        <oboInOwl:hasDbXref>ZFA:0009067</oboInOwl:hasDbXref>
+    </rdf:Description>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_0000117"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
+        <owl:annotatedTarget>ZFA:0009067</owl:annotatedTarget>
+        <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/UnspecifiedMatching"/>
+    </owl:Axiom>
     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_0000118">
         <oboInOwl:hasDbXref>ZFA:0009068</oboInOwl:hasDbXref>
     </rdf:Description>
@@ -4550,18 +4559,9 @@
         <owl:annotatedTarget>FBbt:00006009</owl:annotatedTarget>
         <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/ManualMappingCuration"/>
     </owl:Axiom>
-    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CL_2000029">
-        <oboInOwl:hasDbXref>ZFA:0009067</oboInOwl:hasDbXref>
-    </rdf:Description>
-    <owl:Axiom>
-        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CL_2000029"/>
-        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
-        <owl:annotatedTarget>ZFA:0009067</owl:annotatedTarget>
-        <sssom:mapping_justification rdf:resource="https://w3id.org/semapv/vocab/UnspecifiedMatching"/>
-    </owl:Axiom>
 </rdf:RDF>
 
 
 
-<!-- Generated by the OWL API (version 4.5.26.2023-07-17T20:34:13Z) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->
 

src/ontology/imports/go_terms.txt

@@ -13,3 +13,4 @@ GO:0036053
 GO:0036376
 GO:1990573
 GO:0045428
+GO:0050893