Fixes #2694 NTR placental resident macrophages

[aleixpuigb]

Fixes #2694 NTR placental resident macrophages

[aleixpuigb]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-31/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-31/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

Hofbauer cell http://purl.obolibrary.org/obo/CL_3000001

Removed

• Hofbauer cell definition "A tissue-resident macrophage that is part of the placenta. A Hofbauer cell expresses high levels of growth factors and metalloproteinases that support vasculogenesis, angiogenesis, branching morphogenesis and tissue remodeling. A Hofbauer cell has a fetal origin and is present throughout pregnancy."

  • database_cross_reference "PMID:35438172"

  • database_cross_reference "PMID:30429548"

  • database_cross_reference "GOC:CellBLAST"

  • database_cross_reference "PMID:30498493"

  • database_cross_reference "PMID:34745147"

• Hofbauer cell has_related_synonym "HBC"

  • has_synonym_type abbreviation

• Hofbauer cell SubClassOf tissue-resident macrophage

Added

• Hofbauer cell has_related_synonym "HBC"

  • has_synonym_type abbreviation

  • database_cross_reference "PMID:39007150"

• Hofbauer cell definition "A tissue-resident macrophage that is part of the placenta. A Hofbauer cell expresses high levels of growth factors and metalloproteinases that support vasculogenesis, angiogenesis, branching morphogenesis and tissue remodeling. A Hofbauer cell has a fetal origin, is found in the villous stroma, chorion, and amnion, and is present throughout pregnancy."

  • database_cross_reference "PMID:35438172"

  • database_cross_reference "PMID:30429548"

  • database_cross_reference "GOC:CellBLAST"

  • database_cross_reference "PMID:30498493"

  • database_cross_reference "PMID:34745147"

• Hofbauer cell has exact synonym "fetal Hofbauer cell"

  • database_cross_reference "PMID:39007150"

• Hofbauer cell SubClassOf placental resident macrophage

decidual resident macrophage http://purl.obolibrary.org/obo/CL_4033088

Added

• decidual resident macrophage contributor 0000-0001-7655-4833

• decidual resident macrophage definition "A resident macrophage that is part of the decidua. Some decidual macrophages are derived from maternal blood monocytes that are recruited to the uterus shortly after conception. The main functions of a decidual macrophage are implantation, placental development, immune regulation and vascular remodeling."

  • database_cross_reference "PMID:39007150"

• decidual resident macrophage label "decidual resident macrophage"

• decidual resident macrophage date "2024-10-31T10:33:04Z"^^dateTime

• decidual resident macrophage has_broad_synonym "decidual macrophage"

  • database_cross_reference "PMID:39007150"

• decidual resident macrophage has_broad_synonym "maternal decidual macrophage"

  • database_cross_reference "PMID:39007150"

• decidual resident macrophage contributor 0000-0001-6677-8489

• Class: decidual resident macrophage

• decidual resident macrophage SubClassOf placental resident macrophage

• decidual resident macrophage SubClassOf extraembryonic cell

placental resident macrophage http://purl.obolibrary.org/obo/CL_4033087

Added

• placental resident macrophage definition "A tissue-resident macrophage that is part of the placenta. This cell helps preventing immunological rejection of the fetus by modulating the immune environment. A placental resident macrophage has high plasticity to adapt to the changing needs of each phase of pregnancy."

  • database_cross_reference "PMID:39007150"

• placental resident macrophage label "placental resident macrophage"

• placental resident macrophage has_broad_synonym "placental macrophage"

  • database_cross_reference "PMID:39007150"

• placental resident macrophage contributor 0000-0001-6677-8489

• placental resident macrophage contributor 0000-0001-7655-4833

• placental resident macrophage date "2024-10-31T10:24:21Z"^^dateTime

• Class: placental resident macrophage

• placental resident macrophage SubClassOf tissue-resident macrophage

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

Hofbauer cell http://purl.obolibrary.org/obo/CL_3000001

Removed

• Hofbauer cell definition "A tissue-resident macrophage that is part of the placenta. A Hofbauer cell expresses high levels of growth factors and metalloproteinases that support vasculogenesis, angiogenesis, branching morphogenesis and tissue remodeling. A Hofbauer cell has a fetal origin and is present throughout pregnancy."

  • database_cross_reference "PMID:35438172"

  • database_cross_reference "PMID:30429548"

  • database_cross_reference "GOC:CellBLAST"

  • database_cross_reference "PMID:30498493"

  • database_cross_reference "PMID:34745147"

• Hofbauer cell has_related_synonym "HBC"

  • has_synonym_type abbreviation

• Hofbauer cell SubClassOf tissue-resident macrophage

• Hofbauer cell SubClassOf part of some placenta

Added

• Hofbauer cell has_related_synonym "HBC"

  • has_synonym_type abbreviation

  • database_cross_reference "PMID:39007150"

• Hofbauer cell definition "A tissue-resident macrophage that is part of the placenta. A Hofbauer cell expresses high levels of growth factors and metalloproteinases that support vasculogenesis, angiogenesis, branching morphogenesis and tissue remodeling. A Hofbauer cell has a fetal origin, is found in the villous stroma, chorion, and amnion, and is present throughout pregnancy."

  • database_cross_reference "PMID:35438172"

  • database_cross_reference "PMID:30429548"

  • database_cross_reference "GOC:CellBLAST"

  • database_cross_reference "PMID:30498493"

  • database_cross_reference "PMID:34745147"

• Hofbauer cell has exact synonym "fetal Hofbauer cell"

  • database_cross_reference "PMID:39007150"

• Hofbauer cell SubClassOf placental resident macrophage

decidual resident macrophage http://purl.obolibrary.org/obo/CL_4033088

Added

• decidual resident macrophage contributor 0000-0001-7655-4833

• decidual resident macrophage definition "A resident macrophage that is part of the decidua. Some decidual macrophages are derived from maternal blood monocytes that are recruited to the uterus shortly after conception. The main functions of a decidual macrophage are implantation, placental development, immune regulation and vascular remodeling."

  • database_cross_reference "PMID:39007150"

• decidual resident macrophage label "decidual resident macrophage"

• decidual resident macrophage date "2024-10-31T10:33:04Z"^^dateTime

• decidual resident macrophage has_broad_synonym "decidual macrophage"

  • database_cross_reference "PMID:39007150"

• decidual resident macrophage has_broad_synonym "maternal decidual macrophage"

  • database_cross_reference "PMID:39007150"

• decidual resident macrophage contributor 0000-0001-6677-8489

• Class: decidual resident macrophage

• decidual resident macrophage SubClassOf part of some decidua

• decidual resident macrophage SubClassOf placental resident macrophage

placental resident macrophage http://purl.obolibrary.org/obo/CL_4033087

Added

• placental resident macrophage definition "A tissue-resident macrophage that is part of the placenta. This cell helps preventing immunological rejection of the fetus by modulating the immune environment. A placental resident macrophage has high plasticity to adapt to the changing needs of each phase of pregnancy."

  • database_cross_reference "PMID:39007150"

• placental resident macrophage date "2024-10-31T10:24:21Z"^^dateTime

• placental resident macrophage label "placental resident macrophage"

• placental resident macrophage has_broad_synonym "placental macrophage"

  • database_cross_reference "PMID:39007150"

• placental resident macrophage contributor 0000-0001-6677-8489

• placental resident macrophage contributor 0000-0001-7655-4833

• Class: placental resident macrophage

• placental resident macrophage EquivalentTo tissue-resident macrophage and (part of some placenta)