Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fixes #2694 NTR placental resident macrophages #2715

Merged
merged 2 commits into from
Nov 4, 2024
Merged

Fixes #2694 NTR placental resident macrophages #2715

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
ad71486
Fixes #2694 NTR placental resident macrophages
aleixpuigb Oct 31, 2024
4bc1d97
Merge branch 'master' into 2694_placental_macrophage
aleixpuigb Nov 4, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
32 changes: 28 additions & 4 deletions src/ontology/cl-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3040,6 +3040,8 @@ Declaration(Class(obo:CL_4033083))
Declaration(Class(obo:CL_4033084))
Declaration(Class(obo:CL_4033085))
Declaration(Class(obo:CL_4033086))
Declaration(Class(obo:CL_4033087))
Declaration(Class(obo:CL_4033088))
Declaration(Class(obo:CL_4040000))
Declaration(Class(obo:CL_4040001))
Declaration(Class(obo:CL_4040002))
Expand Down Expand Up @@ -29135,16 +29137,16 @@ EquivalentClasses(obo:CL_3000000 ObjectIntersectionOf(obo:CL_0000067 ObjectSomeV

# Class: obo:CL_3000001 (Hofbauer cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:CellBLAST") Annotation(oboInOwl:hasDbXref "PMID:30429548") Annotation(oboInOwl:hasDbXref "PMID:30498493") Annotation(oboInOwl:hasDbXref "PMID:34745147") Annotation(oboInOwl:hasDbXref "PMID:35438172") obo:IAO_0000115 obo:CL_3000001 "A tissue-resident macrophage that is part of the placenta. A Hofbauer cell expresses high levels of growth factors and metalloproteinases that support vasculogenesis, angiogenesis, branching morphogenesis and tissue remodeling. A Hofbauer cell has a fetal origin and is present throughout pregnancy.")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:CellBLAST") Annotation(oboInOwl:hasDbXref "PMID:30429548") Annotation(oboInOwl:hasDbXref "PMID:30498493") Annotation(oboInOwl:hasDbXref "PMID:34745147") Annotation(oboInOwl:hasDbXref "PMID:35438172") obo:IAO_0000115 obo:CL_3000001 "A tissue-resident macrophage that is part of the placenta. A Hofbauer cell expresses high levels of growth factors and metalloproteinases that support vasculogenesis, angiogenesis, branching morphogenesis and tissue remodeling. A Hofbauer cell has a fetal origin, is found in the villous stroma, chorion, and amnion, and is present throughout pregnancy.")
AnnotationAssertion(terms:contributor obo:CL_3000001 <http://www.wikidata.org/entity/Q97529981>)
AnnotationAssertion(terms:contributor obo:CL_3000001 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(oboInOwl:creation_date obo:CL_3000001 "2019-02-18T19:41:20Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_3000001 "HBC")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39007150") oboInOwl:hasExactSynonym obo:CL_3000001 "fetal Hofbauer cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39007150") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_3000001 "HBC")
AnnotationAssertion(oboInOwl:id obo:CL_3000001 "CL:3000001")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30498493") rdfs:comment obo:CL_3000001 "Hofbauer cells are a heterogenic group of macrophages that resemble M2-like cells. Initially described in chorionic villi in humans, a Hofbauer cell is now often used to describe any fetal-derived placental macrophage that resides within the placental villous core, amnion, and chorion laeve.")
AnnotationAssertion(rdfs:label obo:CL_3000001 "Hofbauer cell")
SubClassOf(obo:CL_3000001 obo:CL_0000864)
SubClassOf(obo:CL_3000001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001987))
SubClassOf(obo:CL_3000001 obo:CL_4033087)

# Class: obo:CL_3000002 (sympathetic noradrenergic neuron)

Expand Down Expand Up @@ -32196,6 +32198,28 @@ AnnotationAssertion(rdfs:label obo:CL_4033086 "lipid-associated macrophage")
SubClassOf(obo:CL_4033086 obo:CL_0000235)
SubClassOf(obo:CL_4033086 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000016626))

# Class: obo:CL_4033087 (placental resident macrophage)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39007150") obo:IAO_0000115 obo:CL_4033087 "A tissue-resident macrophage that is part of the placenta. This cell helps preventing immunological rejection of the fetus by modulating the immune environment. A placental resident macrophage has high plasticity to adapt to the changing needs of each phase of pregnancy.")
AnnotationAssertion(terms:contributor obo:CL_4033087 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(terms:contributor obo:CL_4033087 <https://orcid.org/0000-0001-7655-4833>)
AnnotationAssertion(terms:date obo:CL_4033087 "2024-10-31T10:24:21Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39007150") oboInOwl:hasBroadSynonym obo:CL_4033087 "placental macrophage")
AnnotationAssertion(rdfs:label obo:CL_4033087 "placental resident macrophage")
EquivalentClasses(obo:CL_4033087 ObjectIntersectionOf(obo:CL_0000864 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001987)))

# Class: obo:CL_4033088 (decidual resident macrophage)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39007150") obo:IAO_0000115 obo:CL_4033088 "A resident macrophage that is part of the decidua. Some decidual macrophages are derived from maternal blood monocytes that are recruited to the uterus shortly after conception. The main functions of a decidual macrophage are implantation, placental development, immune regulation and vascular remodeling.")
AnnotationAssertion(terms:contributor obo:CL_4033088 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(terms:contributor obo:CL_4033088 <https://orcid.org/0000-0001-7655-4833>)
AnnotationAssertion(terms:date obo:CL_4033088 "2024-10-31T10:33:04Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39007150") oboInOwl:hasBroadSynonym obo:CL_4033088 "decidual macrophage")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:39007150") oboInOwl:hasBroadSynonym obo:CL_4033088 "maternal decidual macrophage")
AnnotationAssertion(rdfs:label obo:CL_4033088 "decidual resident macrophage")
SubClassOf(obo:CL_4033088 obo:CL_4033087)
SubClassOf(obo:CL_4033088 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002450))

# Class: obo:CL_4040000 (glial restricted tripotential precursor cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10719353") obo:IAO_0000115 obo:CL_4040000 "A glial precursor cell that generates oligodendrocytes and type-1 and type-2 astrocytes. It has been shown in some mammals that this cell type may express A2B5, nestin, FGFR-1, FGFR-2, FGFR-3, PLP, and DM-20 antigens. Unlike oligodendrocyte precursor cell, it does not initially express PDGFR-alpha and can differentiate into both type-1 and type-2 astrocytes.")
Expand Down
Loading