Fixes #2673 NTR CxG type IIx muscle cell

[aleixpuigb]

Fixes #2673 NTR CxG type IIx muscle cell
This PR solves problems of #2729

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-05/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-05/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

type IIx muscle cell http://purl.obolibrary.org/obo/CL_4052026

Added

• type IIx muscle cell hasExactSynonym "type 2x muscle fiber"

  • hasDbXref "PMID:34727990"

• type IIx muscle cell hasExactSynonym "type 2x muscle cell"

  • hasDbXref "PMID:34727990"

• type IIx muscle cell hasExactSynonym "type IIx muscle fiber"

  • hasDbXref "doi:10.1101/2024.05.15.594276"

• type IIx muscle cell comment "In humans, type IIx fiber contains high levels of MYLK2, enhancing contraction speed and force via myosin phosphorylation, especially under low calcium. This mechanism supports post-activation potentiation, increasing force output in fast-twitch muscles. Additionally, this fiber has abundant ACTN3 (α-actinin-3), linked to muscle power, and exhibits the highest shortening velocity among human muscle fiber types."

  • hasDbXref "PMID:34727990"

• type IIx muscle cell contributor 0009-0000-8480-9277

• type IIx muscle cell label "type IIx muscle cell"

• type IIx muscle cell IAO_0000115 "A fast type II muscle cell that is part of the skeletal muscle tissue. This cell is characterized by its intermediate metabolic profile, utilizing both glycolytic and oxidative pathways for energy production. In humans, it is distinguished by the expression of myosin heavy chain 1 (MYH1)."

  • hasDbXref "doi:10.1101/2024.05.15.594276"

  • hasDbXref "PMID:35908794"

  • hasDbXref "PMID:34727990"

  • hasDbXref "PMID:36361732"

• type IIx muscle cell date "2024-11-04T10:26:29Z"^^dateTime

• Class: type IIx muscle cell

• type IIx muscle cell SubClassOf type II muscle cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

type IIx muscle cell http://purl.obolibrary.org/obo/CL_4052026

Added

• type IIx muscle cell has_exact_synonym "type 2x muscle fiber"

  • database_cross_reference "PMID:34727990"

• type IIx muscle cell has_exact_synonym "type 2x muscle cell"

  • database_cross_reference "PMID:34727990"

• type IIx muscle cell has_exact_synonym "type IIx muscle fiber"

  • database_cross_reference "doi:10.1101/2024.05.15.594276"

• type IIx muscle cell comment "In humans, type IIx fiber contains high levels of MYLK2, enhancing contraction speed and force via myosin phosphorylation, especially under low calcium. This mechanism supports post-activation potentiation, increasing force output in fast-twitch muscles. Additionally, this fiber has abundant ACTN3 (α-actinin-3), linked to muscle power, and exhibits the highest shortening velocity among human muscle fiber types."

  • database_cross_reference "PMID:34727990"

• type IIx muscle cell contributor 0009-0000-8480-9277

• type IIx muscle cell label "type IIx muscle cell"

• type IIx muscle cell definition "A fast type II muscle cell that is part of the skeletal muscle tissue. This cell is characterized by its intermediate metabolic profile, utilizing both glycolytic and oxidative pathways for energy production. In humans, it is distinguished by the expression of myosin heavy chain 1 (MYH1)."

  • database_cross_reference "PMID:35908794"

  • database_cross_reference "PMID:36361732"

  • database_cross_reference "PMID:34727990"

  • database_cross_reference "doi:10.1101/2024.05.15.594276"

• type IIx muscle cell date "2024-11-04T10:26:29Z"^^dateTime

• Class: type IIx muscle cell

• type IIx muscle cell SubClassOf type II muscle cell

• type IIx muscle cell SubClassOf part of some skeletal muscle tissue