update data sources to address #177

openworm · Dec 18, 2015 · 9c72213 · 9c72213
1 parent 96ee5e8
commit 9c72213
Showing 1 changed file with 11 additions and 11 deletions.
diff --git a/docs/data_sources.rst b/docs/data_sources.rst
@@ -22,27 +22,27 @@ in a superscript, and the decisions made during the curation process
 Neurons
 -------
 
-- Cell descriptions [1]_: Extracted from WormAtlas.org.  Staged in [this tsv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormAtlas.tsv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L68)
-- Lineage names [1]_: Extracted from WormAtlas.org.  Staged in [this tsv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormAtlas.tsv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L68)
-- Neuron names [2]_: Extracted from WormBase.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormBase.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L145)
+- Neuron names [2]_: Extracted from WormBase.  Dynamic version on [this google spreadsheet](https://docs.google.com/spreadsheets/d/1NDx9LRF_B2phR5w4HlEtxJzxx1ZIPT2gA0ZmNmozjos/edit#gid=1).  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormBase.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L145)
 - Neuron types [1]_: Extracted from WormAtlas.org.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/Modified%20celegans%20db%20dump.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L287)
-- Neurotransmitters [1]_: Extracted from WormAtlas.org.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/Modified%20celegans%20db%20dump.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L262)
-- Neuropeptides [1]_: Extracted from WormAtlas.org.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/Modified%20celegans%20db%20dump.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L274)
-- Innexins [1]_: Extracted from WormAtlas.org.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/Modified%20celegans%20db%20dump.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L268)
+- Cell descriptions [1]_: Extracted from WormAtlas.org.  Staged in [this tsv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormAtlas.tsv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L68)
+- Lineage names [1]_: Extracted from WormAtlas.org.  Dynamic version on [this google spreadsheet](https://docs.google.com/spreadsheets/d/1Jc9pOJAce8DdcgkTgkUXafhsBQdrer2Y47zrHsxlqWg/edit).  Staged in [this tsv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormAtlas.tsv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L68)
+- Neurotransmitters [1]_: Extracted from WormAtlas.org.  Dynamic version on [this google spreadsheet](https://docs.google.com/spreadsheets/d/1Jc9pOJAce8DdcgkTgkUXafhsBQdrer2Y47zrHsxlqWg/edit).  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/Modified%20celegans%20db%20dump.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L262)
+- Neuropeptides [1]_: Extracted from WormAtlas.org.  Dynamic version on [this google spreadsheet](https://docs.google.com/spreadsheets/d/1Jc9pOJAce8DdcgkTgkUXafhsBQdrer2Y47zrHsxlqWg/edit).  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/Modified%20celegans%20db%20dump.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L274)
+- Innexins [1]_: Extracted from WormAtlas.org.  Dynamic version on [this google spreadsheet](https://docs.google.com/spreadsheets/d/1Jc9pOJAce8DdcgkTgkUXafhsBQdrer2Y47zrHsxlqWg/edit).  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/Modified%20celegans%20db%20dump.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L268)
 
 Muscle cells
 ------------
 
-- Cell descriptions [1]_: Extracted from WormAtlas.org.  Staged in [this tsv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormAtlas.tsv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L68)
-- Lineage names [1]_: Extracted from WormAtlas.org.  Staged in [this tsv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormAtlas.tsv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L68)
-- Muscle names [2]_: Extracted from WormBase.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormBase.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L44)
+- Muscle names [2]_: Extracted from WormBase.  Dynamic version on [this google spreadsheet](https://docs.google.com/spreadsheets/d/1NDx9LRF_B2phR5w4HlEtxJzxx1ZIPT2gA0ZmNmozjos/edit#gid=1).  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormBase.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L44)
+- Cell descriptions [1]_: Extracted from WormAtlas.org.  Dynamic version on [this google spreadsheet](https://docs.google.com/spreadsheets/d/1Jc9pOJAce8DdcgkTgkUXafhsBQdrer2Y47zrHsxlqWg/edit).  Staged in [this tsv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormAtlas.tsv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L68)
+- Lineage names [1]_: Extracted from WormAtlas.org.  Dynamic version on [this google spreadsheet](https://docs.google.com/spreadsheets/d/1Jc9pOJAce8DdcgkTgkUXafhsBQdrer2Y47zrHsxlqWg/edit).  Staged in [this tsv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/C.%20elegans%20Cell%20List%20-%20WormAtlas.tsv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L68)
 - Neurons that innervate each muscle [3]_: Extracted from data personally communicated by S. Cook.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/herm_full_edgelist.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L432)
 
 Connectome
 ----------
 
-- Gap junctions [3]_: Extracted from data personally communicated by S. Cook.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/herm_full_edgelist.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L423)
-- Synapses [3]_: Extracted from data personally communicated by S. Cook.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/herm_full_edgelist.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L423)
+- Gap junctions between neurons [3]_: Extracted from data personally communicated by S. Cook.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/herm_full_edgelist.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L423)
+- Synapses between neurons [3]_: Extracted from data personally communicated by S. Cook.  Staged in [this csv file](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/aux_data/herm_full_edgelist.csv).  Parsed by [this method](https://github.com/openworm/PyOpenWorm/blob/945f7172f0dff1d022ce0574f3c630ee53297386/OpenWormData/scripts/insert_worm.py#L423)
 
 Curation note
 ^^^^^^^^^^^^^